The largest database of trusted experimental protocols

μ dish35 mm grid 500

Manufactured by Ibidi
Sourced in Germany

The μ-Dish35 mm Grid-500 is a cell culture dish designed for microscopy applications. It features a grid pattern printed on the bottom surface, which provides a reference system for locating and documenting cells during observation. The dish has a diameter of 35 mm and is made of high-quality polymer material suitable for cell culture.

Automatically generated - may contain errors

5 protocols using μ dish35 mm grid 500

1

Force Mapping and Membrane Tether Analysis of Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Force indentation experiments were carried out continuously on a Nanowizard® II or III AFM (JPK Instruments, Berlin, Germany) while scanning laterally across the sample referred to as force mapping. Before use cantilevers (MLCT; Bruker AFM Probes, Camarillo, USA) were plasma cleaned (30 s, Argon) and incubated with PBS containing 2.5 mg/mL concanavalin A-FITC conjugate (Sigma-Aldrich, Steinheim, Germany) for 1.5 h to establish a strong contact between the indenter and the cell membrane for membrane-tether pulling upon retraction from the cell surface. Afterwards, the cantilever was also calibrated using thermal noise method53 . Prior to indentation experiments cells were seeded on Petri dishes (μ-Dish35 mm Grid-500; ibidi, Martinsried, Germany) and manipulated as desired. After cells reached confluency Petri dishes were mounted on an inverted microscope and kept at 37 °C. Cells were indented up to a force of 1 nN. After a dwell time of 0.5 s the tip was retracted from the cell surface pulling out membrane nanotubes (tethers) from the plasma membrane. The pulling velocity was set to 2 μm/s. Indentation curves were analysed by applying an extended tension model27 39 (link) (vide supra) while tether forces were determined directly from retraction curves (Fig. 1b).
+ Open protocol
+ Expand
2

Ezrin Inhibition in MDCK II Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Madin-Darby canine kidney cells (strain II, MDCK II; Health Protection Agency, Salisbury, UK) were maintained in minimum essential medium (MEM) with Earle’s salts and 2.2 g/L NaHCO3 supplemented with 4 mm l-glutamine and 10% fetal calf serum at 37 °C in a 5% CO2 humidified incubator. Cells were grown to confluency, released from culture flasks using trypsin/EDTA (0.05%/0.02%) and subcultured weekly. Medium additionally contained penicillin (0.2 mg/mL), streptomycin (0.2 mg/mL) and HEPES (15 μm) during experimentation.
For ezrin inhibition experiments with ezrin inhibitor NSC 668394, cells were seeded on Petri dishes (μ-Dish35 mm Grid-500; ibidi, Martinsried, Germany) and grown to confluency. NSC 668394 (Merck Millipore, Molsheim, France) was dissolved in DMSO. An appropiate amount of this stock solution was added to cell culture media (final concentration: cNSC 668394 = 250 μm) and cells were incubated for 3 h. For control measurements cells were incubated for 3 h with media containing the same amount of DMSO without NSC 668394.
+ Open protocol
+ Expand
3

Visualizing Mitochondrial Dynamics in Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Su9-RFP MEFs, Drp1-knockout Su9-RFP MEFs27 (link), and HeLa cells (ATCC CCL-2) were grown on glass-bottomed 35-mm culture dishes (Matsunami, Tokyo, Japan) for conventional observation and a μ-Dish 35 mm Grid-500 (Ibidi, Martinsried, Germany) for CLEM in Dulbecco’s modified Eagle’s medium (DMEM) with 10% foetal bovine serum (FBS) in an incubator with 5.0% CO2 at 37 °C. HeLa cells were transfected with CellLight Mitochondria-GFP or Mitochondria-RFP BacMam2.0 (Thermo Fisher Scientific, Waltham, MA, USA) to visualise mitochondria at 60–70% confluence in complete medium according to the manufacturer’s instructions.
+ Open protocol
+ Expand
4

Immunofluorescence Staining Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
For immunofluorescence, the cells were cultured on glass coverslips or on gridded dishes (μ-Dish 35 mm Grid-500, Ibidi). The cells were fixed for 10 min in 4% PFA/PBS, quenched for 10 min in 50 mM NH4Cl/PBS and then permeabilized for 10 min with 0.1% Triton X-100/PBS. The cells were blocked in 2% BSA, 2% FBS/PBS for 30 min. Primary and secondary antibodies were diluted in blocking solution diluted 1:1 in PBS. The primary antibodies were incubated for a minimum of 1 h at RT, followed by washes in PBS; secondary antibodies were incubated for a minimum of 30 min at RT followed by washes in PBS. Coverslips were mounted with FluorSave (Millipore). For immunostaining against phosphorylated proteins, fixing solution was supplemented with PhosSTOP (1 tablet per 10 ml, Sigma), all PBS solutions were substituted with TBS, and blocking solution was substituted with 5% BSA/TBS. For surface immunostaining, the cells were washed in ice-cold phenol red-free DMEM (Gibco) and incubated with primary antibody diluted in ice-cold phenol red-free DMEM at 4 °C for 45 min. The cells were then washed in ice-cold PBS before fixation at RT in 4% PFA/PBS for 10 min. Secondary antibody staining was then carried out as outlined previously.
+ Open protocol
+ Expand
5

Ezrin silencing in MDCK II cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
MDCK II cells were seeded on Petri dishes (μ-Dish35 mm Grid-500; ibidi, Martinsried, Germany) and grown to 50% confluence. Pooled siRNA targeting ezrin sequences GCUVAAGAUAAUGCUAUGUU, GGCAACAGCUGGAAACAGAUU, GAAGAA-GGCACCUGACUUUUU, and GAUCAG-GUGGUAAAGACUAUU (siGENOME SMARTpool human EZR siRNA; Thermo Fisher Scientific, Lafayette, USA) were transfected using Lipofectamine® RNAiMAX transfection reagent (Life Technologies, Carlsbad, USA) according to the manufacturer’s instructions. Experiments were performed 72 h after incubation with siRNA.
For control measurements non-tageting siRNA sequences UAAGGCUAUGAAGAGAUAC, AUGUAUUGGCCUGUAUUAG, AUGAACGUGAAUUGCUCAA, UGGUUUACAUGUCGACUAA (siGENOME non-targeting siRNA Pool #2, GE Healthcare, Lafayette, USA) were applied.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!