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Sybr green dye

Manufactured by GeneCopoeia
Sourced in United States

SYBR-Green dye is a fluorescent dye used for nucleic acid detection and quantification in real-time PCR (RT-PCR) and other DNA-based applications. It binds to double-stranded DNA and emits a fluorescent signal upon excitation, allowing for the measurement of DNA amplification in real-time.

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3 protocols using sybr green dye

1

Quantifying ANXA2 and GPC1 mRNA Levels

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Total RNA was extracted from tissues or cultured cells using TRIzol reagent (Invitrogen, USA) as described in the protocols. After reverse transcription using cDNA reverse transcriptase (Genecopoeia, Rockville, MD) and Oligo(dT) primers, the mRNA levels of ANXA2, GPC1, and β-actin were analyzed by RT-qPCR using SYBR Green dye (Genecopoeia, Rockville, MD) and Quant Studio 5 RT-qPCR instrument (Applied Biosystems, USA). The mRNAs for ANXA2 and GPC1 were amplified and quantified with the primers listed below. The synthetic oligonucleotide primer sequences for AnnexinA2, Glypican1 and β-actin were as follows: h-AnnexinA2 5′-GATCAGAATCATGGTCTCCCG-3′ (upstream) and 5′-GCCCTTAGTGTCTTGCTGGAT-3′ (downstream); h-Glypican1 5′-TGACTATTGCCGAAATGTGCT-3′ (upstream) and 5′-TCCTGGAGGGCGTTGATG-3′ (downstream); h-β-actin 5′-TAGTTGCGTTACACCCTTTCTTG-3′ (upstream) and 5′-TCACCTTCACCGTTCCAGTTT-3′ (downstream). Amplification conditions were set as follows: predenaturation at 95 °C for 15 min, 40 cycles of denaturation at 95 °C for 15 s, annealing at 60 °C for 30 s, and extension at 72 °C for 60 s. AnnexinA2 and Glypican1 mRNA levels were normalized to that of β-actin.
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2

Quantification of gene expression by qPCR

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Total RNA isolated by TRIzol reagent (Invitrogen, USA) was converted to complementary DNA (cDNA) by a cDNA Synthesis Kit (Gene Copoeia, USA) as per the manufacturer’s instructions. Subsequently, the cDNAs were amplified by real-time qPCR with specific primers (Supplementary Tab. 1) and SYBR-Green dye (Gene Copoeia, USA). PCRs were performed with the following parameters: pre-denaturation at 95 °C for 5 min, 40 cycles of denaturation at 95 °C for 10 s, annealing at 60 °C for 20 s, extension at 72 °C for 30 s. β-Actin was used as an internal control.
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3

Quantitative RT-PCR analysis of ANXA2 and GPC1 mRNA

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Total RNA was extracted from tissues or cultured cells using TRIzol reagent (Invitrogen) as described of the protocols. After reverse transcription using cDNA reverse transcriptase (GeneCopoeia) and Oligo(dT) primer, the levels of mRNA for ANXA2, GPC1 and β-actin were analyzed by real time quantitative RT-PCR using SYBR-Green dye(GeneCopoeia) and Applied Biosystems. The mRNA for ANXA2 and GPC1 were ampli ed and quanti ed with primers as listed below. The synthetic oligonucleotide primer sequences for AnnexinA2, Glypican1 and β-actin were as follows: h-AnnexinA2 5'-GATCAGAATCATGGTCTCCCG-3' (upstream) and 5'-GCCCTTAGTGTCTTGCTGGAT-3' (downstream); h-Glypican1 5'-TGACTATTGCCGAAATGTGCT-3' (upstream) and 5'-TCCTGGAGGGCGTTGATG-3' (downstream); h-β-actin 5'-TAGTTGCGTTACACCCTTTCTTG-3' (upstream) and 5'-TCACCTTCACCGTTCCAGTTT-3' (downstream). Ampli cation condition was set as follows: pre-denaturation at 95°C for 15 min, 40 cycles of denaturation at 95°C for 15 s, annealing at 60°C for 30 s, extension at 72°C for 60 s. AnnexinA2 and Glypican1 mRNA levels were normalized to that of β-actin.
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