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4 protocols using adi spa 835

1

Immunoprecipitation and Western Blot Analysis of Stress Response Proteins

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Cells were lysed with TGNET buffer [50 mM Tris HCl pH7.5, 5% Glycerol, 100 mM NaCl, 2 mM EDTA, 0.5% Triton X-100] containing protease inhibitor cocktail and phosphatase inhibitor cocktail (Roche). Lysates were centrifuged at maximum speed for 15 minutes at 4 °C. Supernatants were subjected to BCA protein assay for normalization, and then 40 μg of protein were used as input lysate to confirm protein expression. From remaining lysates, 700 μg of protein were subjected to immunoprecipitation by addition of 40 μl of Anti-FLAG M2 affinity beads (Sigma-Aldrich, A2220) or HA affinity beads (clone HA-7, Sigma-Aldrich, A2095) followed by incubation with rotation for 2 hours at 4 °C. After centrifugation, beads were washed 4 times with TGNET buffer. The proteins were then eluted with 30 μl of 2X SDS sample buffer by boiling at 95 °C for 5 minutes. Subsequently, samples were subjected to SDS-PAGE followed by western blotting. The following antibodies were used for western blot: HSF1 (Santa Cruz, sc-13516), HSP90 (Enzo Life Science, ADI-SPA-835), HSP70 (Enzo Life Sciences, ADI-SPA-810), HA (Rockland, 600-401-384), and FLAG (Sigma-Aldrich, A8592).
Additional Methods may be found in Supplemental Information.
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2

Western Blot Analysis of Signaling Pathways

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Cells lysates were separated on 4 to 2% gradient SDS–polyacrylamide gels (Bio-Rad), transferred to polyvinylidene fluoride (Millipore) membranes, and blotted with indicated antibodies purchased from CST except for caspase-8 (M058-3, MBL Life Science), RIPK3 (33/16-8G7-1-1, WEHI antibody facility, Australia), phospho-RIPK3 (a gift from Genentech), phospho-MLKL (ab196436, Abcam), FADD (ADI-AAM-212-E; Enzo Life Sciences), tankyrases (sc-365897, Santa Cruz Biotechnology), TRADD (sc-7868, Santa Cruz Biotechnology), PAR (MABC547; Sigma-Aldrich), RNF146 (73-233, NeuroMab), cIAP1 (clone 1E1-1-12, in house), actin (A1978, Sigma-Aldrich), and HSP90 (ADI-SPA-835, Enzo Life Sciences).
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3

Quantifying NPC1 Binding to SARS-CoV-2 N

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High-binding 96-well ELISA plates (Nunc) were coated with 0.5 μg/well of purified SARS-CoV-2 N protein in carbonate/bicarbonate buffer 0.05 M pH 9.6 and allowed to bind over night at 4 °C. Then, endogenous human NPC1 and HSP90 were purified using Immobilized Recombinant Protein G Resin (Generon) and 4 μg of specific antibodies against NPC1 (Abcam, ab108921) or HSP90 (Enzo Life Sciences, ADI-SPA-835) respectively. This procedure was performed as described in Co-IP assays except the elution step, that in this case was done with glycine 200 mM pH 2.5. Serial dilutions of endogenous NPC1 and HSP90 were added to the plate and capture was allowed to proceed for 1 h at 37 °C. Subsequently, plates were washed with PBS-T (PBS 0.1% Tween 20) and the binding of NPC1 to SARS-CoV-2 N protein was detected with a rabbit anti-NPC1 antibody (1:2000), revealed with an anti-rabbit HRP (1:2000) using a colorimetric substrate (OPD) and finally, quantified by absorbance at 492 nm in the EnSight multimode plate reader of PerkinElmer.
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4

Epigenetic and Transcriptional Regulation

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5-aza-2′-deoxycytidine (5-aza-dC), progesterone, and the β-actin antibody (#A1978) were obtained from Sigma Aldrich. LBH589, SAHA, MS275 and PXD101 were purchased from Selleck Chemicals and resuspended in DMSO. Antibodies against PRA/B (#3153), PRB (#3157), p27 (#3686), FoxO1 (#2880), cyclin D1 (#2926), histone H3 acetylated at lysine 9 (H3K9Ace, #9671), H3K18Ace (#9675), and p21 (#2947) were from Cell Signaling. The antibody against Hsp90 (ADI-SPA-835) was from Enzo. PR antibody (sc-539) was from Santa Cruz Biotechnology.
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