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2 protocols using anti ddb1

1

Antibody-Based Protein Detection Methods

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Anti-HA high-affinity (Roche), anti-CSA, anti-CSB, anti-flag, and anti-cdk7 from Santa Cruz, nucleolin antibody from Abcam, anti-DDB1 from Cell Signaling, anti-CSA antibody from Genetex, and anti-CSA antibody from F. Coin were used. Production of the RPA-135 is described in Assfalg et al.13 (link)
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2

Immunoblotting Analysis of Protein Ubiquitination

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Cell lysates were prepared using RIPA lysis buffer (Pierce) containing a proteinase inhibitor cocktail (Roche Diagnostics). A total of 30 μg protein extracts were quantified and then subjected to electrophoresis on a 12% SDS-PAGE gel. The proteins were transferred to polyvinylidene difluoride (PVDF) membranes (Amersham Biosciences) and blocked in Tris-buffered saline (TBS) containing 2% bovine serum albumin (BSA). The specific antibodies used including anti-FLAG (Cell Signaling Technology), anti-USP15 (Santa Cruz), anti-K48-linkage Specific Polyubiquitin (Cell Signaling Technology), anti-ubiquitin (Cell Signaling Technology), anti-DDB1(Cell Signaling Technology), anti-USP5 (Santa Cruz), and anti-β-actin(Sigma Aldrich). Proteins were detected by addition of alkaline phosphatase (AP)-conjugated secondary antibody. Visualization of the immunoreactive proteins was performed by addition of CDP STAR reagents (Roche). Densitometry analysis of band signals was carried out using Image J software and the levels of HBx protein in cells transfected with pHBx-FLAG + pUSP15-myc were expressed as the relative intensity (RI) to that in the empty vector control pUSP5-myc or pHBx-FLAG after normalization to β-actin.
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