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12 protocols using skimmed milk

1

Protein Analysis of Retinal Tissues

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The total protein was isolated from retinal tissues using RIPA reagent (Solarbio) containing PMSF (Solarbio). Afterwards, the protein concentration was quantified by a BCA protein
concentration assay kit (Solarbio), and electrically separated by 10% sodium dodecyl sulfate-polyacrylamide gel. Protein in the target region was transferred to the PVDF membranes
(Millipore, Billerica, MA, USA), which were then blocked in 5% skimmed milk (Sangon) for 1 h at room temperature. The blocked PVDF membranes were incubated in primary antibodies overnight at
4°C and then in goat anti-rabbit/mouse HRP-conjugated secondary antibody 37°C for 1 h. Protein bands were visualized via chemiluminescent (ECL) (Solarbio, China) and quantified by
Gel-Pro-Analyzer software. Antibodies used here were shown in Supplementary Table 1.
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2

Western Blot Protein Detection Protocol

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For western
blot analysis, total cell lysate, aptamer-pulled-down proteins, or
membrane proteins were used. The samples were mixed with loading buffer
and heated at 100 °C for 10 min, then separated using 10% SDS-PAGE
with a 5% stacking gel. The proteins were transferred onto a polyvinylidene
fluoride membrane (Millipore, USA). The membrane was then blocked
using 5% skimmed milk (Sangon, China) in PBS supplemented with 0.1%
(v/v) Tween-20 buffer (PBST) for 1 h at room temperature. Incubation
proceeded overnight at 4 °C with the appropriate primary antibody.
After washing the membrane with fresh PBST at room temperature three
times (5 min each), it was incubated with an HRP-conjugated secondary
antibody (1:5000 dilution, Santa) at room temperature for 1 h. The
membrane was washed four times with fresh PBST and detected using
Super Signal West Femto Maximum Sensitivity Substrate (Thermo Fisher
Scientific). The images were acquired using an Amersham Imager 600
(GE Healthcare).
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3

Comprehensive Western Blot Protocol

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Western blot was carried out as previously described [11] (link). Brie y, cellular lysis was achieved by incubation for 30 minutes in ice-cold radioimmunoprecipitation assay buffer (RIPA) lysis buffer supplemented with a protease inhibitor cocktail (Bimake, China). The soluble proteins derived from the supernatants of the centrifugation of the cellular lysates at 12,000 ⋅g, 4 °C for 10 min were measured using a BCA assay kit (Fude, China). They were then mixed with SDS-PAGE loading buffer and separated by SDS-PAGE. The 0.22 µm PVDF membrane (Millipore, USA) blotted with proteins was blocked with 5% skimmed milk (Sangon, China) in Tris buffered saline with 0.5% Tween-20 (TBST) followed by incubation in suitable primary antibodies. The membranes were then probed with appropriate HRP-conjugated secondary antibodies (Fude, China). Membranes were rinsed thrice in TBS (10 minutes each) at each interval. Signals were immediately documented using ChemiDoc™ chemiluminescence system (Biorad, USA) after membranes were subjected to ECL substrates (Fude, China).
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4

Crucian Carp Antibody Response to ORF132 Protein

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ELISA was used to analyze ORF132 specific antibody induced by EBY100/pYD1-ORF132 in crucian carp serum. The ELISA plate was coated with 1 µg/mL fish serum and blocked with PBS containing 5% skimmed milk (Sangon, Shanghai, China) for 2 h at 37 °C. After that, the plates were incubated with 1 µg ORF132 amino acid residue (KKKKKTTKKSSSKSSGKNKRSGGYDN) for 1 h at 37 °C. ORF132 polyclonal antibody from mouse was custom made in GL Biochem (Shanghai, China) using amino acid residue (KKKKKTTKKSSSKSSGKNKRSGGYDN). Next, 100 µL ORF132 polyclonal antibody (1:2000 diluted) was added to each well and incubated 1 h at 37 °C. Next, HRP-conjugated Goat Anti-mouse IgG (1:5000 diluted) (Beyotime) was used to recognize ORF132 polyclonal antibody. Finally, TMB (TianGen) was used as colorimetric substrate and the plates were read at 450 nm with a microplate reader (Potenov, Beijing, China).
ORF132 was analyzed by ABCpred and DNAStar, antigenic epitope fragment rich region (amino acids 127–152, KKKKKTTKKSSSKSSGKNKRSGGYDN) was selected to produce ORF132 polyclonal antibody. ORF132 polyclonal antibody was custom made in GL Biochem Ltd. (Shanghai, China) by peptides amino acids 127–152.
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5

Quantitative Western Blot Analysis

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Total protein was isolated using RIPA buffer (Beyotime Institute of Biotechnology, Inc.) and quantified using the BCA method. The protein sample (50 µg per lane) was separated on 10% gels using SDS-PAGE, transferred onto PVDF membranes (MilliporeSigma) and immersed in Tris-buffered saline with Tween-20 containing 5% skimmed milk (Sangon Biotech, Inc.). After immunoblotting with primary antibodies (1:1,000 dilution) at 4°C overnight and secondary antibodies (1:1,000 dilution) at room temperature for 1 h. ECL luminescence reagent (Sangon Biotech, Co., Ltd.) was added dropwise onto the PVDF membrane. Bands were visualized using the Bio-Rad Universal Hood II Gel Doc Imaging system (Bio-Rad Laboratories, Inc.) and grey values were analyzed using Image J software version 1.8.0.112 [US National Institutes of Health (NIH)]. All antibodies used were purchased from Abclonal as follows: ROCK2 (cat. no. A2395); β-catenin (cat. no. A19657); AKT (cat. no. A17909); MMP-2 (cat. no. A19080); GAPDH (cat. no. A19056); and the secondary antibody (cat. no. AS014).
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6

Western Blot Analysis of Myocardial Proteins

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The total of myocardium proteins were extracted via 10% to 15% SDS-PAGE (Sangon Biotech, Shanghai, China) and transformed onto polyvinylidene fluoride membranes (Merck Millipore, Germany). The skimmed milk (concentration: 5%; Sangon Biotech, Shanghai, China) was used for the blockage of the membrane for 60 min at 25 °C. Then the membrane incubation was carried out with primary antibodies at 4 °C for 24 h. The primary antibodies specific to XIAP (Cat. No.ab229050, 1:1,000), TNF-α (Cat. No.ab205587, 1:1,000), interleukin-1β (IL-1β; Cat. No.ab254360, 1:1,000), interleukin 6 (IL-6; Cat. No.ab9324, 1:1,000) and GAPDH (Cat. No.ab9485, 1:10,000) were provided by Abcam (Cambridge, UK), followed by Tris-buffered saline with Tween-20 (TBST) washing thricely, the membrane incubation was carried out with secondary antibodies fused with horseradish peroxidase in TBST for 60 min at 25 °C. Enhanced chemiluminescence detection system (Santa Cruz, CA, USA) was considered for the identification of the signals. However, Image Lab (Bio-Rad, USA) software was used for the evaluation of protein bands.
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7

Spinal Cord Epidural Adhesion Proteomics

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The tissues of spinal cord epidural adhesions were collected from different groups and homogenized with RIPA buffer (Biosharp, Hefei, China). The mixture was incubated on ice for 30 minutes, then centrifuged in a frozen centrifuge at 12000 rpm for 15 minutes to extract the supernatant. Protein content was detected by bicinchoninic acid protein determination kit (Beyotime Institute of Biotechnology, Shanghai, China) and heated at 95°C for 10 min. Total proteins were separated by 12% Tris-glycine gels(Epizyme, Shanghai, China) electrophoresis and transferred to polyvinylidene uoride (PVDF) membrane(0.45µ m; Millipore, Bedford, MA, USA).Then, the membranes were blocked with 5% skimmed milk (Sangon Biotech, Shanghai, China) and incubated with primary antibodies overnight at 4°C. Afterward, the PVDF membranes were washed with TBST buffer and incubated with secondary antibodies for 1h at room temperature. After washing, Use chemiluminescence detection kits on blots according to manufacturer's instructions (Millipore). Images were collected with the Chem-iDoc™ XRS + system(Bio-Rad Laboratories, Hercules, CA, USA) and quanti ed by Image J software.
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8

Immunoblotting of T Cell Subsets

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Rabbit anti-human antibody CHSY3 (100 μg) was obtained from OriGene China. The primary antibody to β-actin and CD3+/CD4+/CD8+ T cells alpha rabbit monoclonal antibody were provided by Cell Signaling Technology, Inc. (Danvers, MA, United States). Horseradish peroxidase (HRP)-conjugated anti-rabbit antibody was provided by Jackson ImmunoResearch Inc. (West Grove, PA, United States). Bovine serum albumin was obtained from Sigma-Aldrich (St. Louis, MO, United States). Skimmed milk and Tween-20 were purchased from Sangon Biotech Co., Ltd. (Shanghai, China).
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9

Identification of Mite-Specific IgE Antibodies

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The antigens were separated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto a nitrocellulose membrane as described previously [24 (link)]. The membranes were washed three times for 5 min each in TBST (20 mM Tris–HCl, 150 mM NaCl, 0.05% [V/V] Tween 20, pH 7.4) at RT, coated in 5% skimmed milk (Sangon Biotech) for 2 h and incubated overnight with sera from mite-allergic mice (diluted 1:5 with 0.01 M PBS). The membranes were washed four times and incubated with biotinylated anti-mouse IgE antibody (diluted 1:600 with PBS; BioLegend) for 1 h at 37 °C. Next, the membrane was washed and incubated with HRP–streptavidin (diluted 1:800 with PBS; BioLegend) for 30 min at 37 °C. Lastly, the membrane was washed four times, and protein signals were detected using diaminobenzidine (TIANGEN).
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10

Western Blot Analysis of CDK16 Protein

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The rabbit anti-human CDK16 antibody was purchased from CUSABIO (CSB-PA017648ESR2HU) (100 μl, Wuhan, China). A horseradish peroxidase (HRP)-conjugated anti-rabbit antibody was purchased from Jackson ImmunoResearch Inc. (West Grove, PA, United States). Bovine serum albumin was purchased from Sigma-Aldrich (St. Louis, MO, United States). Skimmed milk and Tween-20 were purchased from Sangon Biotech Co., Ltd. (Shanghai, China). The TRIzol reagent was purchased from Thermo Fisher Scientific (United States). The PrimeScriptTM First Strand cDNA Synthesis Kit was purchased from TaKaRa (Tokyo, Japan), and the SYBR Green Real-Time PCR Master Mix was purchased from TOYOBO (Osaka, Japan).
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