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5 protocols using anti phospho atm ser1981

1

Western Blot Analysis of DNA Damage Signaling

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Whole cell protein extracts were prepared according to Laemmli (1970 (link)). The primary antibodies used were: anti-ATM (1:500), anti-phospho-ATM Ser1981 (1:500), anti-p300 (1:500) (Abcam, Cambridge, UK), anti-GAPDH (1:50000) (Millipore, Darmstadt, Germany); anti-p21WAF1/Cip1 (1:500) (Sigma-Aldrich, St. Louis, USA); anti-p53 (1:500), (Santa Cruz Biotechnology, Santa Cruz, USA); anti-ATR (1:500), anti-phospho-ATR Ser428 (1:500), anti-phospho-p53 Ser15 (1:250), anti-acetyl-p53 Lys382 (1:200), anti-SIRT1 (1:250), anti-phospho-SIRT1 Ser47 (1:250), anti-p38 MAPK (1:500), anti-phospho-p38 MAPK Thr180/Tyr182 (1:500), anti-phospho-MAPKAPK-2 Thr334 (1:500), anti-AMPKα (1:500), anti-phospho-AMPKα Thr172 (1:1000), anti-ACC (1:500), anti-phospho-ACC Ser79 (1:1000), anti-mTOR (1:500), anti-phospho-mTOR Ser2448 (1:500), anti-phospho-S6 Ser235/236 (1:1000) (Cell Signaling Technology, Denvers, USA), anti-Rb (1:250) (NeoMarkers, Fremont, USA). The respective proteins were detected after incubation with one of the horseradish peroxidase-conjugated secondary antibodies (1:2000) (Dako, Glostrup, Denmark), using an ECL system (Thermo Scientific, Rockford, USA), according to the manufacturer’s instructions.
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2

Comprehensive Western Blot Analysis of Apoptosis and Cell Cycle Regulators

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Western blot assay was performed according to a previous study.
24 (link) Primary antibodies against various proteins were as follows: anti‐cleaved caspase‐3, anti‐cleaved caspase‐8, anti‐cleaved caspase‐9, anti‐BCL2, anti‐BCL‐XL, anti‐BAX were obtained from Cell Signaling Technology (CST, Beverly, USA); anti‐CDK4, anti‐CDK6, anti‐CyclinD1, anti‐Trip13, anti‐Ku70, anti‐Ku80, anti‐H2AX, anti‐phospho‐ H2AX (γ‐H2AX), anti‐CHK2, anti‐phospho‐CHK2 (Thr68), anti‐ATM, anti‐phospho‐ATM (Ser1981), and anti‐GAPDH were obtained from Abcam (Cambridge, MA, USA); anti‐β‐actin was obtained from Sigma (S. Louis, MO, USA).
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3

Western Blot Analysis of DNA Damage Response

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Whole cell protein extracts were prepared according to Laemmli [56 (link)]. The primary antibodies used were: anti-ATM (1:500), anti-phospho-ATM Ser1981 (1:500) (Abcam, Cambridge, UK); anti-GAPDH (1:50000) (Millipore, Darmstadt, Germany); anti-p53 (1:500) (Santa Cruz Biotechnology, Santa Cruz, USA); anti-p21 (1:500) (Sigma-Aldrich, St. Louis, USA); anti-phospho-p53 Ser15 (1:250), anti-sirt 1 (1:250), anti-phospho-sirt 1 Ser47 (1:250), anti-sirt 3 (1:500), anti-sirt 5 (1:500), anti-sirt 6 (1:1000), anti-sirt 7 (1:250) anti-AMPKα (1:500), anti-phospho-AMPKα Thr172 (1:1000), anti-phospho-ACC Ser79 (1:1000) (Cell Signaling Technology, Denvers, USA). The respective proteins were detected after incubation with the horseradish peroxidase-conjugated secondary antibodies (1:2000) (Dako, Glostrup, Denmark), using an ECL system (Thermo Scientific, Rockford, USA, according to the manufacturer's instructions.
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4

ATM/DNA-PK Regulation of DDR Signaling

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HCT116 Flp-In T-REx cells were treated with 10 μg/mL doxycycline (Dox) for 16 hr to induce the expression of homeodomain proteins. KU-55933 (EMD Millipore) and NU-7441 (R&D Pharmaceuticals; 3712) were used to treat cells for 1 hr for ATM or DNA-PK inhibition, respectively. DNA-damaging agents and hydrogen peroxide treatments were used to treat cells as indicated in figure legends. After treatment, cells were scraped into PBS and centrifuged at 800 × g for 2 min. Cells were lysed with cell lysis buffer, and lysates were clarified at 10,000 × g for 10 min. The protein concentrations of the lysates were quantified using Bradford assay, and protein levels were normalized for all samples. Primary antibodies used were anti-ATM (Santa Cruz), anti-phospho-Ser1981-ATM (Abcam), anti-Kap1 (Abcam; ab22553), anti-phospho-Ser824-Kap1 (Bethyl Laboratories; A300–767A), anti-Nbs1 (Genetex; GTX70224), anti-Rad50 (Genetex; GTX70228), anti-Mre11 (Genetex; GTX70212), anti-MBP (Rockland; 200–401–385), anti-Flag (Sigma; A1205), anti-β-actin (Cell Signaling; 4970), anti-Chk2 (Genetex; GTX70295), anti-phospho-Thr68-Chk2 (Cell Signaling; 2661S), anti-phospho-Ser15-p53 (Abcam; ab1431), and anti-phospho-Ser15-p53 (mouse) (Assay Biotech; A7180). Alexa Fluor 68-anti-rabbit and IRDye 800 anti-mouse were the secondary antibodies used. Membranes were scanned and quantified using the Odyssey system (Li-Cor).
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5

ATM/DNA-PK Regulation of DDR Signaling

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HCT116 Flp-In T-REx cells were treated with 10 μg/mL doxycycline (Dox) for 16 hr to induce the expression of homeodomain proteins. KU-55933 (EMD Millipore) and NU-7441 (R&D Pharmaceuticals; 3712) were used to treat cells for 1 hr for ATM or DNA-PK inhibition, respectively. DNA-damaging agents and hydrogen peroxide treatments were used to treat cells as indicated in figure legends. After treatment, cells were scraped into PBS and centrifuged at 800 × g for 2 min. Cells were lysed with cell lysis buffer, and lysates were clarified at 10,000 × g for 10 min. The protein concentrations of the lysates were quantified using Bradford assay, and protein levels were normalized for all samples. Primary antibodies used were anti-ATM (Santa Cruz), anti-phospho-Ser1981-ATM (Abcam), anti-Kap1 (Abcam; ab22553), anti-phospho-Ser824-Kap1 (Bethyl Laboratories; A300–767A), anti-Nbs1 (Genetex; GTX70224), anti-Rad50 (Genetex; GTX70228), anti-Mre11 (Genetex; GTX70212), anti-MBP (Rockland; 200–401–385), anti-Flag (Sigma; A1205), anti-β-actin (Cell Signaling; 4970), anti-Chk2 (Genetex; GTX70295), anti-phospho-Thr68-Chk2 (Cell Signaling; 2661S), anti-phospho-Ser15-p53 (Abcam; ab1431), and anti-phospho-Ser15-p53 (mouse) (Assay Biotech; A7180). Alexa Fluor 68-anti-rabbit and IRDye 800 anti-mouse were the secondary antibodies used. Membranes were scanned and quantified using the Odyssey system (Li-Cor).
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