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5 protocols using phosphor rb

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Comprehensive Immunoblotting and Immunoprecipitation

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For immunoblotting, immunoprecipitation and immunostaining, we used antibodies against cyclin E1 (Santa Cruz, BioLegend or Millipore), cyclin D1, cyclin D3, cyclin B1, Cdk1, Cdk2, Cdk4, Cdk5, p107, Pcna, B-Myb, Fig 4, Rbbp9 (Santa Cruz), p130 (Santa Cruz or BD Transduction Labs or Bethyl Laboratories), HA (Covance), actin, Flag, Mybl1, cyclin A2 (Sigma), Gapdh (Invitrogen or Millipore), Lin9, Lin37, Lin52, Lin54, Rbbp4, Rbbp7 (Bethyl Laboratories), E2f4, Dp1, Cdc7 (Lab Vision), thiophosphate ester, Dmrtc2 (Abcam or Sigma), Mapk15 (Abcam), RalA, mTOR/Frap1, cyclin B3, phosphor-Rb, Tubulin and Miwi (Cell Signaling). Purified rabbit IgG was from either Bethyl Laboratories or Santa Cruz and mouse IgG from Santa Cruz. For immunoprecipitation, we also used anti-Flag M2 agarose (Sigma) and HA beads that were prepared by conjugating Protein A Sepharose (Amersham) with anti-HA antibody in 12CA5 ascites fluid (Covance).
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2

Immunoblotting for Cell Cycle Regulation

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Total cell lysates (20 μg) were resolved by 10% SDS–PAGE, transferred to nitrocellulose membranes, and immunoblotted with antibodies for SphK2, cleaved Caspase3/9, Myt1, phosphor-Cdc2, Cyclin B1, Cyclin D1, phosphor-Rb (Cell Signaling, Danvers, Massachusetts, USA) and β-Actin (Sigma, St. Louis, Missouri, USA) for loading controls. Immunoreactive bands were identified using an enhanced chemiluminescence reaction (Perkin-Elmer, Waltham, Massachusetts, USA), and visualized by autoradiography.
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3

Western Blot Protein Expression Analysis

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Western blotting experiments were performed by following a previous study [25 (link)]. The primary antibodies for CXCR4 (Enzo Life Sciences, Farmingdale, NY, USA), phospho-p53, STAT3, phosphor-ERK1/2, ERK1/2, phosphor-Rb (Cell Signaling Technology, Danver, MA, USA), p53, p21, phosphor-STAT3, Nibrin (NBS1), breast cancer type 1 susceptibility protein (BRCA1), checkpoint kinase 1 (Chk1), Chk2, Cyclin A (Santa Cruz, CA, USA), zonula occludens-1 (Zo-1), occludin (OCLN) (Thermo Scientific, Waltham, MT, USA), and Claudin-5 (MILLPORE, Damstadt, DE, USA) were used. The concentration of antibodies used was 1:1000 for primary antibodies and 1:2000 for secondary antibodies. After reacting with the antibody, the protein was observed by chemiluminescence using Amersham Imager 600 (GE Healthcare, Chicago, IL, USA); beta-actin was used as the loading control.
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4

Breast Cancer Cell Culture Protocol

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Dulbecco’s modified Eagle’s medium (DMEM), DMEM/F12, fetal bovine serum (FBS), penicillin and streptomycin were obtained from GIBCO (Carlsbad, CA). 1-(4-pyridinyl)-3-(2-quinolinyl)-2-propen-1-one (PFK15; Selleck, Houston, TX), dimethylsulfoxide (DMSO; Sigma-Aldrich, St Louis, MO), Gelatin, propidium iodide (PI) and Ribonuclease A (Sigma-Aldrich, St Louis, MO), Mounting Medium with DAPI (Zhongshan, Beijing, China) were purchased. MatrigelTM matrix (BD Biosciences, San Jose, CA), transwell Boyden chamber system and 6-well Ultralow Adherence plates (Corning life Sciences, Wilkes Barre, PA), 0.5% Triton X-100 (MP Biomedical, Solon, OH) were also used. Epithelial growth factor (EGF) and basic fibroblast growth factor (bFGF) were purchased from Peprotech (Rocky Hill, NJ). Antibodies including PFKFB3, phosphor-Rb, cyclinD1, cleaved-caspase3 (Cell Signaling, Danvers, MA), Bcl2 (Abcam, Cambridge, UK) and β-Actin (Santa Cruz, CA) were purchased. All other chemicals were classified as analytical grade reagents.
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5

Western Blot Antibody Validation

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Antibodies against SphK2, c-Myc and GAPDH were purchased from Abcam. Antibodies against ERK1/2, phosphor-ERK1 (Thr202/Tyr204)/ERK2 (Thr185/Tyr187), cyclin D1, phosphor-Rb were purchased from Cell Signaling Technology. U0126 was ordered from Sigma-Aldrich.
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