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8 protocols using 3 3 hexafluoro 2 propanol

1

Preparation of Amyloid-Beta Oligomers

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AβO were obtained from synthetic Aβ 1-42 peptide (AnaSpec San Jose, CA, USA AS-20276) using a method previously described [48 (link)]. The peptide was diluted with 1,1,1,3,3,3-hexafluoro-2-propanol (Sigma-Aldrich Merck KGaA, Darmstadt, Germany H-8508) and incubated 1 h at room temperature followed by 15 min to 4 °C. The solvent was evaporated overnight, and the pellet was suspended in Dimethyl sulfoxide (Sigma-Aldrich Merck KGaA, Darmstadt, Germany) to get a 5 mM solution. Finally, to obtain the oligomer forms aliquots of 100 µM of the peptide were prepared with sterile phosphate-buffered saline 1× and incubated to 4 °C for 24 h. A simple transmission electron microscopy (TEM; FEI-TecnaiBioTWIN, Hillsboro, OR, USA) analysis of 5 µL of this solution was conducted to corroborate the presence of globular oligomers and the absence of fibrils. Also, low-molecular weight oligomers (<17 KDa) were corroborated with western blot, using the Aβ antibody 6E10 (MAB1560, Chemicon, Merck Millipore, Massachusetts, USA) (data not shown).
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2

Preparation of Oligomeric Aβ42 Peptide

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Oligomeric Aβ was prepared as previously described (Beck et al., 2016 (link)). Aβ42 peptide (GenicBio, A-43-T-1000) was diluted in 1,1,1,3,3,3-hexafluoro-2-propanol (Sigma-Aldrich) to 1 mM. After centrifugation, the supernatant was aliquoted in microcentrifuge tubes and dried overnight in the fume hood to generate a peptide film. The peptide film was then diluted in DMSO to 5 mM and resuspended in cold HAM’S F-12 (Sigma-Aldrich) to 100 μM. The solution was then incubated at 4°C for 24h to prepare oligomeric Aβ42.
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3

Optimized Nucleic Acid Extraction Protocol

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RNase T1, RNase A, Nuclease P1, triethylamine, TRI-Reagent®, sodium citrate, sodium chloride, sodium dodecyl sulfate and 1,1,1,3,3,3-Hexafluoro-2-propanol (HFIP) were purchased from Sigma Aldrich. Snake venom phosphodiesterase was purchased from Worthington Biochemical Corporation (Lakewood, NJ). Antarctic phosphatase was purchased from New England Biolabs (Ipswich, MA). Nucleobond AX 500 columns were purchased from Macherey-Nagel (Bethlehem, PA). Streptavidin agarose beads, Hypercarb Hypersep Spin Tips, Eppendorf tubes and conicals, ammonium acetate, LC-MS grade formic acid, ethanol and isopropyl alcohol were purchased from Fisher Science (Fair Lawn, NJ). LC-MS grade water and acetonitrile was purchased from Honeywell B&J (Morristown, NJ). The biotinylated DNA probe (5′ – /5Biosg/GGA CTC GAA CCT GCG ACC TAC CGG T – 3′) was purchased from Integrated DNA Technologies (Coralville, IA).
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4

Electrospun CSS-PCL Composite Fibers

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CSS was synthesized, according to a procedure detailed in our previous studies [7 (link),38 (link)]. An acidic solution of CSS at a concentration of 69% w/w was prepared in a mixed solvent that comprises 1 mL of tetrahydrofuran (Sigma Aldrich) and 10μL of 37% aqueous HCl. The solution was incubated overnight in a 40°C water bath, permitting CSS hydrolysis and polymerization. The hydrolyzed and polymerized CSS solution was then electrospun into lipid fibrous membranes using a custom made device with a flow rate of 0.5 μL/min, a voltage of 12 kV, and a spinneret-to-ground distance of 12 cm. The fibers were collected on silicon chips.
A solution of PCL (MW: 80 kDa, Sigma Aldrich) at a concentration of 10% w/v was prepared in 1,1,1,3,3,3-Hexafluoro-2-propanol (MW: 168.04, Sigma Aldrich). The solution was incubated at room temperature for a minimum of 6 h, briefly vortexed, and then electrospun into fiber with a flow rate of 20 μL/min, a voltage of 12 kV, and a spinneret-to-ground distance of 12 cm. The electrospun PCL fibers were collected on silicon chips that were placed on top of the aluminum foil collector plate. Approximately half of the collected PCL fibers immediately underwent an air-plasma treatment (Harrick Plasma, Model PDC-001) for 10 min under vacuum, generating plasma-treated PCL fibers.
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5

Preparation of Oligomeric Aβ42 Peptide

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Oligomeric Aβ was prepared as previously described (Beck et al., 2016 (link)). Aβ42 peptide (GenicBio, A-43-T-1000) was diluted in 1,1,1,3,3,3-hexafluoro-2-propanol (Sigma-Aldrich) to 1 mM. After centrifugation, the supernatant was aliquoted in microcentrifuge tubes and dried overnight in the fume hood to generate a peptide film. The peptide film was then diluted in DMSO to 5 mM and resuspended in cold HAM’S F-12 (Sigma-Aldrich) to 100 μM. The solution was then incubated at 4°C for 24h to prepare oligomeric Aβ42.
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6

Fabrication of Antibiotic-Loaded PDS Scaffolds

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Polydioxanone (PDS II; Ethicon, Somerville, NJ) filaments were subjected to an undying process to remove the violet color. In brief, PDS filaments were immersed in dichloromethane (Sigma-Aldrich, St Louis, MO) for 2 days (16 (link)–19 ). A 10 wt% PDS solution was prepared in 1,1,1,3,3,3-hexafluoro-2-propanol (Sigma-Aldrich). MET, CIP, and MINO (Sigma-Aldrich) were added to the polymer solution at 25 wt% concentration (relative to the total PDS [600 mg] weight, ie, 150 mg of each drug) and mixed together under stirring (16 (link)–19 ). Pure PDS (control) and the TAP-mimic polymer solutions were spun into scaffolds (ie, flow rate 2 mL/h, 18-cm distance, and electrical voltage between 15 and 19 kV). The polymer solutions were individually placed into plastic syringes (Becton, Dickinson and Company, Franklin Lakes, NJ) fitted with a metallic 27-gauge blunt needle, and the fibers were collected on an aluminum foil covered rotating mandrel at room temperature (RT) (16 (link)–19 ). To ensure complete elimination of any residual solvent, the scaffolds were dried for 48 hours under vacuum at RT and then stored at 4°C (16 (link)–19 ).
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7

Fabrication and Characterization of Electrospun IL-4 Loaded Scaffold

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The scaffold was fabricated by electrospinning PGC (Advanced Inventory Management, Mokena, IL) and gelatin (Sigma-Aldrich, St Louis, MO). Both materials were fully dissolved in 1,1,1,3,3,3-hexafluoro-2-propanol (Sigma-Aldrich, St Louis, MO, USA) at a final weight/volume concentration of 14%. For drug-eluting scaffold, IL-4 (20 μg/mL) was added to the polymer solution. During the fabrication, 0.5 mL of the solution was electrospun at a feeding rate of 3 mL/h to a collector placed at 25 cm from the needle tip with the presence of a 30 kV voltage. Scaffolds were retrieved and desiccated in vacuum for 24 h prior to subsequent analyses. The morphology of the scaffold was investigated using scanning electron microscope (SEM). Diameters of electrospun fibers in respective scaffolds were measured in the SEM images.
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8

Synthesis of Multifunctional Nanoparticles

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1,1,1,3,3,3-Hexafluoro-2-propanol (HIFP, 99.99%), 1,4-Bis(2-hydroxyethyl)piperazine (HEP, 99%), 1,6-hexanediol (HD, 99%), 4,4′-Methylenebis(phenyl isocyanate) (MDI, 98%), anhydrous 1,2-dichloroethane (DCE, 99.8%), anhydrous diethyl ether (>99%), anhydrous N,Ndimethylformamide (DMF, 99.8%), dibutyltin dilaurate (DBTDL, 95%), dimethyl sulfoxide (DMSO, ≥99.5%), propylene glycol (PG, >99.5%), and tetrahydrofuran (THF) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Polyethylene glycol (Mw = 6,000) was purchased from EMD Chemicals (Mississauga, ON, Canada). Visiblex TM color-dyed polystyrene nanoparticles (PSNs, 200 nm, COOH on its surface, media: 0.1% Tween 20 in deionized water) was purchased from Phosphorex Inc. (Hopkinton, MA, USA). C 12 -HPC(2-(4,4-Difluoro-5-Methyl-4-Bora-3a,4a-Diaza-s-Indacene-3-Dodecanoyl)-1-Hexadecanoyl-sn-Glycero-3-Phosphocholine) was purchased from Thermo Fisher Scientific (Asheville, NC, USA). Vaginal fluid simulant (VFS) was prepared by dissolving 1.0 g acetic acid, 0.018 g bovine serum albumin, 0.222 g Ca(OH) 2 , 0.6 g glycerol, 5.0 g glucose, 1.4 g KOH, 2.0 g lactic acid, 3.51 g NaCl, and 0.4 g urea in 1 L of distilled water. The pH of VFS was adjusted by adding 0.1 N HCl or 0.1 N NaOH solution [31] .
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