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3 protocols using az628

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Chemical Agents for Neuroscience Research

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ω-Agatoxin, AM-0902, AMG9810, AZ-628, 1,9-dideoxyforskolin, 6-Bnz-cAMP, 8-Br-cAMP, brain-derived neurotrophic factor (BDNF), CE3F4, 8-pCPT-2-O-Me-cAMP sodium salt (CPTOMe-cAMP), ω-conotoxin (CTX) MVIIC, [D-Ala2, NMe-Phe4, Gly-ol5]-enkephalin (DAMGO), ESI-05, ESI-09, diltiazem, forskolin, gabapentin, guanfacine, H89, HJC0350, ifenprodil, KT5720, L-732,138, MK-801, ML-786, NKH-477, (2R/S)-6-PNG, protein kinase inhibitor 14–22 (PKI 14–22), SNX-482, SQ22536, Torin-2, U0126 and U-73122 were from Tocris (Ellisville, MO). Baclofen and capsazepine were from Research Biochemicals International (RBI, now Sigma-Aldrich). Bovine serum albumin, cyanquixaline (6-cyano-7-nitroquinoxaline-2,3-dione) (CNQX), complete Freund’s adjuvant (CFA), ketamine, lidocaine, Phosphatase Inhibitor Cocktail 2 and common reagents were from Sigma-Aldrich. Matrigel was from BD Biosciences (San Jose, CA). Fura2-AM, nerve growth factor, neurobasal media, NuPAGE Tris-Acetate SDS gels, NuPAGE reagents and Pierce™ Protein-Free T20 (TBS) blocking buffer were from Life Technologies, Grand Island, NY. Halt™ Protease Inhibitor Cocktail and Pierce BCA Protein Assay Kit were from Thermo Fisher Scientific. Fetal bovine serum was from Irvine Scientific, Santa Ana, CA. Drugs were prepared as stock solutions of 1–10 mM in DMSO or water and then diluted in aCSF.
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2

Dissecting Signaling Pathways in Cancer Cells

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Antibodies used: GAPDH (HyTest Ltd., clone 6C5, cat. # 5G4), caspase-3 (Abcam, ab4051), Cdk6 (Abcam, ab3126), Ras (Stressgen, now Enzo Life Sciences; ADI-KAP-GP001), p-ERK (Santa Cruz, sc-7383), Hsp70 (Abcam, ab181606), p27Kip1 (Cell Signaling, #2552), Nr2f1 (ABGENT, #AP14218a), tubulin (Merck, CP06), Cdk4 (NeoMarkers, MS-616-P1), Raf-1 (Santa Cruz Biotechnology, sc-133), Akt (Cell Signaling, #9272). Transfection reagents: jetPRIME (Polyplus, #114–15), polyethylenimine (PEI) (Polysciences, # 621405). Hsp90 inhibitors: geldanamycin (LC Laboratories, G-4500), PU-H71 (Tocris, #3104), pochoxime A (kindly provided by Nicolas Wissinger, University of Geneva). Other inhibitors: AZ628 (Tocris, #4836), PD98059 (Tocris, #1213), cycloheximide (Sigma, C7698), rapamycin (LC Laboratories, R-5000), aphidicolin (ACROS, BP615-1), hydroxyurea (fluorochem, #043351). All compounds were dissolved in DMSO. Growth factors: insulin (Sigma, I6634), recombinant human epidermal growth factor (EGF) (Lonza, CC-4017). Metabolic assay reagents: Oligomycin (SIGMA, 7535), carbonyl cyanide-p-trifluoromethoxyphenylhydrazone (FCCP) (SIGMA, C2920) and rotenone (SIGMA, R8875) with antimycin (SIGMA, A8674).
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Cell Line Authentication and Maintenance Protocol

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PC9 cells were from Kyushu University, Japan. EVSA-T and MKN-45 cells were from DSMZ. All other cell lines were from American Type Culture Collection. All cell lines were banked at the Genentech cell line core facility that routinely performs single nucleotide polymorphism (SNP) and short tandem repeats (STR) analysis to confirm cell line identity and detect possible mycoplasma contamination. PC9 cells were cultured in RPMI medium (Gibco) containing 4.5 g l−1 of D-glucose and supplemented with 10% fetal bovine serum, 2 mM L-glutamine, and 100 U ml−1 of penicillin and streptomycin. All other cell lines were maintained in RPMI medium (Gibco) supplemented with 10% fetal bovine serum, 2 mM L-glutamine, and 100 U ml−1 of penicillin and streptomycin. Lapatinib was from LC Laboratories, cinnamycin was from Sigma, AACOCF3 was from Santa Cruz Biotechnology, paclitaxel was from US Biologicals, carboplatin was from Selleckchem, AZ628 was from Tocris Bioscience, Bisindolylmaleimide I, XI and XI were from Cayman Chemicals, PKC-20-28 was from EMD Millipore, phorbol-12-myristate13-acetate was from VWR Scientific, and erlotinib and GDC-0980 were synthesized at Genentech.
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