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2 protocols using anti endoplasmic reticulum resident protein erp 44

1

Protein Expression Analysis in Cell Lysates

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After treatment under the indicated conditions, cells were washed with PBS, suspended in radioimmunoprecipitation (RIPA) buffer, incubated on ice for 15 min, and centrifuged at 20380 g for 12 min. Whole cell lysate was subjected to Western blot analysis as described previously.7 To analyze the expression of ubiquitinated proteins in the detergent‐insoluble fractions (pellets obtained after the protein extraction using RIPA buffer), the pellets were washed with PBS, lysed using Extraction buffer 4 in the WSE‐7421 EzSubcell Extract kit (ATTO, Tokyo, Japan), and then subjected to Western blot analysis. The following antibodies were used: anti‐cyclin D1, anti‐cyclin‐dependent kinase (CDK) 4, anti‐glucose‐regulated protein (GRP) 78, anti‐ubiquitin, anti‐histone deacetylase (HDAC) 1, anti‐HDAC3, and anti‐HDAC6 from Santa Cruz Biotechnology (Santa Cruz, CA, USA); anti‐cleaved poly(ADP‐ribose) polymerase (PARP), anti‐HSP70, anti‐endoplasmic reticulum resident protein (ERP) 44, and anti‐endoplasmic oxidoreductin‐1‐like protein (Ero1‐L) from Cell Signaling Technology (Danvers, MA, USA); anti‐active caspase 3, anti‐NOXA, and anti‐acetylated histone from Abcam (Cambridge, UK); and anti‐actin from Millipore (Billerica, MA, USA).
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2

Molecular Profiling of Bladder Cancer Cells

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After treating bladder cancer cells under the indicated conditions for 48 hours, whole cell lysates were obtained using radioimmunoprecipitation assay buffer. Equal amounts of protein were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to nitrocellulose membranes. After the membranes were blocked with 5% skimmed milk, they were incubated with the primary antibodies: anti-AMPK and anti-PPARγ from Proteintech (Rosemont, IL, USA); anti-phosphorylated AMPK (p-AMPK), anti-phosphorylated histone H2AX (p-H2AX), and anti-endoplasmic reticulum resident protein (ERp) 44 from Cell Signaling Technology (Danvers, MA, USA); anti-glucose-regulated protein (GRP) 78, anti-cyclin D1, anti-cyclin E, anti-cyclin-dependent kinase (CDK) 2, anti-CDK4, anti-HDAC1, anti-HDAC3, and anti-HDAC6 from Santa Cruz Biotechnology (Santa Cruz, CA, USA); anti-acetylated histone from Abcam (Cambridge, UK); and anti-actin from Millipore (Billerica, MA, USA). Then the protein was detected by reaction with recommended secondary antibody (horseradish-tagged goat anti-rabbit or goat antimouse antibody (GE Healthcare UK, Amersham, UK)) and staining with chemiluminescence solution (Clarity Western ECL Substrate, Bio-Rad, Hercules, CA, USA) and imaged with ChemiDoc Touch Imaging System (Bio-Rad).
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