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5 protocols using anti ephb4

1

Ephrin-B2 and EphB4 Protein Analysis

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Cells were lysed with radioimmunoprecipitation assay buffer (RIPA) buffer (Beyotime Institute of Biotechnology) and 1 mM phenylmethylsulfonyl fluoride (PMSF) (Beyotime Institute of Biotechnology). Forty micrograms of protein was separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) under reducing conditions and transferred onto nitrocellulose membranes (Pall Corp., Pensacola, FL, USA). Blocked in 5% (w/v) milk for 1 h, membranes were then incubated with the following primary antibodies overnight at 4°C: anti-ephrinB2 (1:2000; Abcam, Cambridge, UK), anti-phospho-ephrinB2 (Tyr324/329; 1:500; Cell Signaling Technology, Danvers, MA, USA), anti-EphB4 (1:200; Santa Cruz Biotechnology, Dallas, TX, USA), anti-phospho-EphB4 (1:1000; Signalway Antibody, College Park, MD, USA), and anti-β-actin (1:3000, Beyotime Institute of Biotechnology). Blots were then incubated with horseradish peroxidase–conjugated goat anti-rabbit or anti-mouse secondary antibodies (Proteintech, Wuhan, Hubei, China). Tanon4500 Immunodetection System (Tanon Science & Technology Co., Ltd., Shanghai, China) was used for visualization of blots. Quantification of the blots was performed using Image J.
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2

Shear Stress-Induced Protein Expression

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Cells grown in glass slides were treated with shear stress for 2 h. Then total protein was obtained by using M-PER protein extraction buffer, and quantified using a BCA kit (Thermo Fisher Scientific, Inc.) and separated on 7.5 or 12% polyacrylamide gel followed by transfer onto an ImmunBlot PVDF membrane (GE Healthcare Life Sciences, Little Chalfont, UK). The membranes were blocked for 1 h with 5% BSA in Tris-phosphate buffer containing 0.05% Tween-20 (TBS-T). It was further incubated overnight at 4°C with anti-Notch1 (1:2,000; ab52627), anti-DLL4 (1:1,000; ab7280), anti-Hey1 (2 μg/ml, ab22614), anti-Hey2 (2 μg/ml; ab25404) all from Abcam (MA, USA); anti-EphrinB2 (1:1,000; sc-398735) and anti-EphB4 (1:1,000; sc-130081) both from Santa Cruz Biotechnology, Inc. (Dallas, TX, USA); anti-VEGFR2 (1:2,000; ab39256) and anti-CD31 (1:500; ab28364) both from Abcam, primary antibodies. After three washes (5 min) with TBS-T, membranes were further incubated with HRP-conjugated secondary antibodies: anti-rabbit (cat. no. 7074) or anti-mouse (cat. no. 7076) both from Cell Signaling Technology, Inc., (Danvers, MA, USA) for 1-2 h and followed by three washes with TBS-T. The target protein signal was detected and digitized using ECL (Thermo Fisher Scientific, Inc.).
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3

EphB4 Phosphorylation Assay in HUVEC and 3T3 Cells

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EphB4 phosphorylation in HUVEC cells was induced by overlaying 3T3 cells for 15 min. EphB4 phosphorylation in EphB4-expresing 3T3 cells was stimulated by anti-EphB4 (Genentech, 5 μg ml−1) or ephrinB2-Fc (5 μg ml−1) for 10 min. The cells were lysed in NP-40 lysis buffer (50 mM Tris (pH 7.5), 150 mM NaCl, 1% NP-40) supplemented with Protease Inhibitor Cocktail (Sigma, Cat. # p8340) and Phosphatase Inhibitor Cocktail 2 (Sigma, Cat. # 5726). Cell lysates were clarified and subjected to immunoprecipitation using phage-derived anti-EphB4 antibody (Genentech, 5 μg ml−1), followed by immunoblotting with anti-phosphotyrosine antibody (Sigma, clone 4G10, 1 μg ml−1), or anti-EphB4 (Santa Cruz, Cat. # sc-5536, 1 μg ml−1). The bound antibodies were detected using horseradish peroxidase (HRP)-conjugated secondary antibodies (Jackson ImmunoResearch, 1:20,000) and Enhanced chemiluminescence (ECL). The full western blot data are shown in supplementary Fig. 10.
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4

Immunohistochemistry and Immunofluorescence Analysis

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Primary antibodies included: anti-α-actin (Abcam, ab5694; IHC and IF, 1:100); anti-CD34 (R&D, AF4117; IF, 1:100); anti-CD68 (ED1; Abcam, ab31630; IHC, 1:100; IF, 1:50);anti- COUPTFII (Novus biologicals, NBP1–67885; IHC, 1:100), anti-dll-4 (santa cruz, sc-18640; IHC, 1:50), anti-Eph-B4 (Santa Cruz, sc-5536; IF, 1:50); anti-Ephrin-B2 (Santa Cruz, sc-1010; IF, 1:50); anti-GAPDH (Cell Signaling, 14C10; WB, 1:2000); anti-notch-4 antibody (Santa Cruz, SC5594; IHC, 1:50); Secondary antibodies used for IF were: donkey anti-goat Alexa-Fluor-488, donkey anti-rabbit Alexa-Fluor-488, donkey anti-rabbit Alexa-Fluor-568, donkey anti-mouse Alexa-Fluor-568 and chicken anti-mouse Alexa-Fluor-488 conjugated antibodies from Invitrogen (1:500). For IHC, sections were incubated with EnVision reagents for 1 h at room temperature and treated with Dako Liquid DAB+ Substrate Chromogen System (Dako). Finally, the sections were counterstained with Mayer’s hematoxylin.
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5

Comprehensive Immunohistochemistry and Immunofluorescence Protocol

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Primary antibodies included: anti-α-actin (Abcam, ab5694; IHC and IF, 1:100; WB, 1:1000); Dako actin (Smooth Muscle) Clone 1A4; anti-cleaved Caspase-3 (Cell Signaling #9661; IHC, 1:50; WB, 1:1000); anti-CD31 (Abcam, ab28364; IHC and IF, 1:50); anti-CD34 (R&D, AF4117; IF, 1:100; WB, 1:1000); anti-CD68 (ED1; Abcam, ab31630; IHC, 1:200; WB, 1:1000); anti-Eph-B4 (Santa Cruz, sc-5536; IF, 1:50); anti-Ephrin-B2 (Novus, NBP1-48610; IHC, 1:50); anti-GAPDH (Cell Signaling, 14C10; WB, 1:2000); anti-IL-10 (Abcam, ab9969; IF, 1:100); anti-Ki67 (Abcam, ab15580; IHC and IF, 1:100; WB, 1:1000); anti-phospho-mTOR (Cell Signaling, #2971; IHC, 1,50; WB,1:1000); anti-mTOR (Cell Signaling, #2972; WB, 1:1000); anti-transglutaminase 2 (TGM2; #37557; IF, 1:100); anti-VEGFR2 (ABCAM, ab2349; IF, 1:100; WB,1:1000); Secondary antibodies used for IF were: donkey anti-goat Alexa-Fluor-488, donkey anti-rabbit Alexa-Fluor-488, donkey anti-rabbit Alexa-Fluor-568, donkey anti-mouse Alexa-Fluor-568 and chicken anti-mouse Alexa-Fluor-488 conjugated antibodies from Invitrogen (1:1000). For IHC, sections were incubated with EnVision reagents for 1 h at room temperature and treated with Dako Liquid DAB + Substrate Chromogen System (Dako). Finally, the sections were counterstained with Mayer’s hematoxylin.
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