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5 protocols using flica 660 caspase 1 assay kit

1

Quantification of Active Caspase-1 in Cells

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The levels of active caspase-1 were quantified in live cells using FLICA 660 Caspase-1 Assay Kit (ImmunoChemistry Technologies Cat# 9122). This assay employs a fluorescent inhibitor probe 660-YVAD-fmk to label active caspase-1 in living cells. Briefly, following 24h treatment with ssRNA40 or ssRNA41, HMG cells were washed with PBS and incubated with FLICA™ 660-YVAD-fmk (1:60 dilution) for 30min. After two washes with PBS, cells were further stained with Aqua stain (Live/Dead™ Fixable Dead cell Stain Kit; Molecular Probes Cat# L34957). Cells were resuspended in PBS for flow cytometry analysis using BD FACSCanto RUO-ORANGE analyzer. Data were analyzed using FlowJo v10 software (Tree Star). The levels of active caspase-1 were also measured in the culture supernatants using the Human Caspase-1/ICE Quantikine ELISA Kit (R&D Systems Cat# DCA100). This assay specifically measures the active caspase-1 by using an antibody against p20 subunit of caspase-1.
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2

Measuring Macrophage Caspase-1 Activation in Shigella Infection

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A pool of 3 dpf Tg(mpeg1::Gal4-FF)gl25/Tg(UAS::LIFEACT-GFP)mu271 larvae were infected systemically with 10000 CFUs of mCherry–S. sonnei 53G, mCherry–S. flexneri M90T, or PBS containing mock solution. At 4 hpi, larvae were dissociated by treatment with 1 mL of 4% trypsin for 15 minutes at 28 °C. Single-cell dissociation was facilitated by mechanical disruption with a P1000 pipette after trypsin treatment. Dissociated cells were harvested by centrifugation (5 minutes, 800g, room temperature), washed in calcium-free PBS, separated by passage on a 4 μm cell strainer, and suspended in 500 μL of staining solution for active caspase 1 (FLICA 660 Caspase-1 Assay Kit, probe 660-YVAD-FMK, No. 9122; ImmunoChemistry Technologies) prepared per the manufacturer's guidelines. Upon staining, cells were pelleted, washed in PBS, and fixed in 4% paraformaldehyde overnight. For flow cytometry, cells were washed with 2 mL of PBS twice and resuspended in 300 μL of PBS. Active caspase 1 staining of single macrophages was measured on a LSRII (BD Biosciences) and data were analyzed with FlowJo version 10.7.1.
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Chromatin Modulation Experimental Protocols

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Protein A-Sepharose and Protein G-Sepharose CL-4B Fast Flow beads were from GE Healthcare Bio-Sciences Corp., Piscataway, NJ. Cyto Nuclear extract kit was from Active Motif, Carlsbad, CA. Trichostatin A (TSA), Leptomycin B (LPT), and nicotinamide were from Sigma-Aldrich. The CytoTox 96 non-radioactive cytotoxicity kit was from Promega, Madison, WI. SlowFade Gold Antifade reagent with DAPI was from Life Technologies. Verikine human IFN-β ELISA kit was from PBL Assay Science, Piscataway Township, NJ. IL-1β ELISA kit was from RayBiotech, Inc. Norcross, GA. The FLICA 660 Caspase-1 Assay kit was from Immunochemistry Technologies, Bloomington, MN. P300 and HDAC activity assay kits were from BioVision Inc., Milpitas, CA.
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Immunological Assays with Epithelial and Macrophage Cells

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Human kidney epithelial cells (HEK239T) and immortalized bone-marrow derived macrophages (iBMDMs) were cultured in Dulbecco’s Modified Eagle Medium/high glucose(DMEM) (Hyclone, Cat.#SH30243.1) supplemented with 10% fetal bovine serum (FBS) (Atlanta Biologicals, Cat.#S11050) and 1X-Glutamax (Gibco, Cat. #35050–061). FuGENE6 was from Roche Applied Science (Cat.#11988387001). Primary human monocytes were obtained from University of Nebraska Medical Center and cultured in DMEM supplemented with 10% Human AB Serum (Corning, Cat.#35–060-Cl). THP1 cells were cultured in RPMI-1640 (Hyclone, Cat.# SH30027.01) supplemented with 10% FBS, 1X-β-mercaptoethanol (Gibco, Cat.#21985) and 1X-Glutamax (Gibco, Cat. #35050–061). Nigericin was from InvivoGen (Cat.#tlrl-nig) and reconstituted in ethanol as per the manufacturer’s instructions. The FLICA-660 caspase-1 assay kit was purchased from Immunochemistry Technologies (Cat.#9122) and FLUORO-GEL II Mounting Medium with DAPI was from EMS (Cat.#17985–51).
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5

Multiparametric Caspase Activity Assay

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Peptides (Proteogenix) were received as dry powder and reconstituted with water for use. Peptide (clone G46-6, Biolegend), CCR5-PE (clone 3A9, BD), p24-FITC (clone KC57, Coulter). AAC-11 expression was analyzed by intracellular flow cytometry staining using BD Cytofix/Cytoperm TM buffer set (BD) and anti-AAC-11 primary antibody (ab65836, abcam) at 1/100 dilution followed by a secondary antibody conjugated to A674 (ThermoFisher, A21244) at a 1/1000 dilution. Caspase activity was assayed with the following probes according to the manufacturer's instructions: caspase-1 660-YVAD-FMK probe (FLICA 660 Caspase-1 Assay Kit, ImmunoChemistry Technologies LLC ), caspase-2 FAM-VDVAD-FMK probe (FAM-FLICA Caspase-2 Assay Kit, ImmunoChemistry Technologies LLC ), caspase-3/7 SR-DEVD-FMK probe (SR-FLICA Caspase-3/7 Assay Kit, ImmunoChemistry Technologies LLC ) and caspase-8 FAM-LETD-FMK probe (FAM-FLICA Caspase-8 Assay Kit, ImmunoChemistry Technologies LLC ). FACS sorting was performed on BD Aria and flow cytometry acquisition on BD LSRII.
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