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Zen2010 program

Manufactured by Zeiss
Sourced in Germany

The ZEN2010 program is a software application developed by Zeiss to support the operation and analysis of microscopy data. It provides a user interface and tools for controlling Zeiss microscopes, capturing images, and processing the acquired data. The software offers features for image acquisition, processing, and analysis, enabling users to perform tasks related to their microscopy-based research or applications.

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3 protocols using zen2010 program

1

Immunofluorescence Imaging of Mitotic Cells

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For immunofluorescence observation, HeLa cells were seeded on 24-well microplates at 2 or 4 × 104 cells/mL and cultured for 24 h. The cells were further cultured with DMSO, nocodazole (200 nM), BI2536 (200 nM), and KBJK557 (200 μM) for 18 h. The medium in the microplate wells was then removed and cells were fixed with 4% formaldehyde in PBS for 15 min and then permeabilized for 5 min with 0.1% NP-40 in PBS. The cells were washed with PBS containing 1% bovine serum albumin (PBS-1% BSA) and then treated with 5% bovine serum albumin for 20 min. The cells in each well were treated with anti-Plk1 (mouse) and anti-CREST (human) antibody in PBS-0.1% BSA and then placed in a humidified atmosphere at room temperature and incubated for 1.5 h. After being washed with PBS-0.1% BSA, treated wells were incubated with Alexa Fluor 488-conjugated human anti-IgG antibody and Texas Red-conjugated mouse anti-IgG antibody in PBS-0.1% BSA and then incubated at room temperature for 60 min. After being washed with PBS-0.1% BSA, the dish wells were overlaid with DAPI for 10 min at room temperature and then washed with PBS-0.1% BSA. Fluorescence was photographed with an inverted Zeiss 710 confocal microscope (Carl Zeiss, Oberkochen, Germany). The signal intensity was measured by the ZEN2010 program (Carl Zeiss, Oberkochen, Germany).
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2

Immunofluorescence Staining of Brain Tissue

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Brain sections (5 μm) were fixed in 10% buffered formalin for 24 h and then embedded in paraffin following standard protocols. For immunohistochemical analysis, paraffin was removed and the tissues were rehydrated and boiled for 2 min in citrate buffer. After, samples were incubated 10 min with ammonium chloride. Subsequently, tissue sections were incubated 10 min with PBS/Triton X-100 0.1% and further incubated for 20 min with PBS/BSA 2%. Sections were then incubated overnight at 4oC with mouse monoclonal antibody raised against human α-tubulin at a 1:50 dilution, or rabbit polyclonal antibody raised against proteins obtained from C. glabrata at a 1:500 dilution. After this incubation, the sections were washed with PBS and incubated for 1 hour at 37ºC with donkey anti-mouse IgG secondary antibody conjugated to Alexa 555 (Invitrogen) for α-tubulin and donkey anti-rabbit IgG secondary antibody conjugated to Alexa 555 or Alexa 488 (Invitrogen) at a 1:500 dilution for anti-C. glabrata. Afterwards, tissue sections were stained with DAPI (Merck). Then, samples were treated with Autofluorescence Eliminator Reagent (Merck). Finally, sections were observed using a LSM710 confocal laser scanning microscope combined with the upright microscope stand AxioImager.M2 (Zeiss). The spectral system employed was Quasar + 2 PMTs. Zeiss ZEN 2010 Program.
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3

Identification of ASC Oligomers

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Microscopy was performed as described previously (Yeon et al., 2017 (link)). For the identification of ASC oligomers, BMDMs were fixed with cold methanol and stained with anti-ASC antibody and FITC-conjugated secondary antibody. An LSM710 confocal microscope was used to obtain images, which were then processed by the Zen2010 program (Zeiss, Oberkochen, Germany).
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