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Spectramax i3x spectrophotometer

Manufactured by Molecular Devices
Sourced in United States

The SpectraMax i3x spectrophotometer is a high-performance multi-mode microplate reader designed for a wide range of absorbance, fluorescence, and luminescence-based assays. It features a xenon flash lamp, variable bandwidth monochromators, and a high-sensitivity PMT detector. The SpectraMax i3x supports a variety of microplate formats and enables precise, reproducible measurements across multiple applications.

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14 protocols using spectramax i3x spectrophotometer

1

Spectroscopic Characterization of Fluorescent Proteins

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Spectra were measured using a SpectraMax i3x spectrophotometer (Molecular Devices) across the wavelength range of 250 to 840 nm with a 5 nm step size. Spectra of storage buffer was recorded as a background reference. Extinction coefficients were calculated following basic denaturation in 0.1 N NaOH (44,000 M−1 cm−1 at 446 nm) according to the Beer–Lambert law, as previously described (7 (link), 49 (link)). Fluorescence quantum yields were measured using fluorescein in 0.1 N NaOH as a reference standard, and EYFP and EGFP expressed and purified under the same conditions were used to calibrate with published values (49 (link)).
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2

Biofilm Formation Assay in Microplates

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Biofilm assays were performed on microtiter plates as described previously70 , with some modifications. Overnight cultures were inoculated 1:100 into fresh LB medium, LB + 0.15% bile salts, or LB + 0.2% NaGCH. 100 μl of each diluted bacterial cultures were grown in a round-bottom 96-well polystyrene microtiter plate (Corning® Cat. No. CLS3795 Sigma). Planktonic growth was determined by measuring the absorbance (600 nm); wells were then rinsed with water, and attached cells were stained with 125 μl crystal violet (Sigma-Aldrich). Stained cells were solubilized with 200 μl 80% ethanol, and 125 μl of the solution was transferred to a flat-bottom 96-well polystyrene microtiter plate (Corning®, Cat. No. CLS3595 Sigma). Absorbance (540 nm) was measured with a SpectraMax i3x spectrophotometer (Molecular Devices). For each experiment, the absorbance of the blank control with crystal violet was subtracted from each experimental sample. Six replicates were used in each experiment, and six independent experiments were performed.
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3

Cytotoxicity Evaluation of AbrNLP2

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Purified AbrNLP2 was directly infiltrated into the leaves of 5–6-week old N. benthamiana and B. juncea plants to check for cytotoxicity. The sPOX assay was carried out as described earlier with minor modifications (Mott et al., 2018 (link)). Briefly, 5 mm leaf disks were excised from N. benthamiana and B. juncea plants and washed with distilled water for 2 h with agitation in a 96 well plate. After washing, water was carefully removed out while minimizing the damage to the leaf disks. 100 μl of purified AbrNLP2 protein was added in the designated wells while remaining wells filled with buffer and incubated for 20 h with agitation. After incubation, the leaf disks were carefully removed from the wells and 50 μl of 5-aminosalicylic acid (1 mg/ml) supplemented with 0.01% H2O2 was added in each well. After 3 min, 20 μl of 2N NaOH was added to each well to stop the reaction and absorbance was measured at OD600 in a SpectraMax i3x spectrophotometer (Molecular Devices). A heteroscedastic (between two samples of unequal variances) single tailed t-test was conducted to determine if there were significant differences in the sPOX activities of the buffer-treated samples and AbrNLP2-treated samples.
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4

Quantifying Cellular Metabolic Activity via MTT Assay

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To quantify changes in cellular metabolic activity, NAD(P)H-dependent enzymatic reduction of the tetrazolium dye 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT; MP Biomedicals, Solon, OH) to insoluble formazan precipitate was measured. Stock MTT solution was prepared in PBS at 5 mg/mL. 200 μL of stock MTT was added to the 2 mL complete cell media for a working concentration of ~ 500 μg/mL, and incubated during the final 4 h of each treatment condition. Cells were washed three times with PBS and 500 μL dimethylsulfoxide (DMSO) was added to each well to dissolve the formazan, the plates were covered with aluminum foil, and gently agitated on a nutating shaker for 15 min, and optical densities (OD) at 540 nm were measured on a Spectramax i3x spectrophotometer (Molecular Devices, Sunnyvale, CA). Background OD measurements were subtracted out using DMSO from atop cells without MTT incubation, and changes in metabolic activity were calculated relative to respective vehicle control-treated cells never exposed to microplastics. The MTT assay results for each condition were normalized to their respective number of cells per well.
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5

Glutathione Quantification Assay

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The intracellular concentrations of reduced (L-γ-glutamyl-L-cysteinylglycine), oxidized (GSSG; glutathione disulfide), and total glutathione were evaluated using a GSH, GSSG, and total glutathione determination kit (Abcam, Cambridge, UK). Cells treated with 200 μg/mL XOS and controls grown in a complete medium without XOS for 24 h were used in the experiment. To determine GSH, GSSG, and total glutathione concentrations, the protocol supplied by the manufacturer of the kit was strictly followed. Results were obtained by fluorescent intensity quantification of the samples using a SpectraMax i3x spectrophotometer (Molecular devices, San Jose, CA, USA) at Excitation/Emission ¼ 350/470 nm. All samples were assayed in triplicates.
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6

SH-SY5Y Cell Viability Assay

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SH-SY5Y human neuroblastoma cells are related to aging, and the viability of SH-SY5Y cells were detected by MTT (3-(4, 5-dimethylthiazol-2-yl)-2, 5diphenyl tetrazolium bromide) assay [31 (link)]. Cells were seeded overnight at a density of 105 cells/well 96-well plates in 100 μL medium. The Cells were co-incubated with 20 μM CP-6 with streptozotocin (STZ, 0.8 μM) for 24 h. Then, the medium was removed and added 0.5 mg/μL MTT. After incubation at 37 °C for 4 h, 100 μL of dimethyl sulfoxide (DMSO) was added to SH-SY5Y cells each well, and the mixture was shaken at a low speed for 15 min to fully dissolve the formazan crystals, followed by the measurement of the absorbance at 490 nm using an SpectraMax i3x spectrophotometer (Molecular Devices, USA).
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7

Quantifying Bacterial EPS Matrix Formation

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EPS matrix detection was performed as described previously 72. In brief, 130 l diluted bacterial cultures (1:50 from an overnight bacterial) in LB, LB + 0.15% bile or LB + 0.2% NaGCH were grown in a black 96-well clear flat bottom polystyrene plate (Corning® Cat. No. CLS3603 Sigma) overnight at 37 °C. Planktonic bacteria was transferred to a new 96-well polystyrene microtiter plate (Corning®, Cat. No. CLS3595 Sigma). Wells in the black plate were fixated with formaldehyde/glutaraldehyde, rinsed with PBS and stained with 150 l of Concanavalin A (ConA) conjugated to fluorescein isothiocyanate (FITC) (25 g/ml) for 15 min. After rinsing with PBS, the amount of retained ConA-FITC was measured using a SpectraMax i3x spectrophotometer (Molecular Devices) at 480 nm. This assay was performed in four independent experiments.
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8

Quantifying Bacterial Biofilm Formation

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Biofilm assays were performed on microtiter plates as described previously (61 (link)). Overnight cultures were diluted 1:100 in fresh LB medium without salt. Aliquots (150 μl) of the diluted samples were incubated in the wells of a flat-bottomed 96-well polystyrene microtiter plate (Corning) for 48 h at 28 or 37°C. Each cell culture (100 μl) was transferred into another flat-bottom 96-well polystyrene microtiter plate and spectrophotometrically measured at 600 nm to assess planktonic bacterial growth. After the planktonic bacteria were discarded from the initial microtiter plate, bacterial cells bound to the wells were gently washed twice with 200 μl of phosphate-buffered saline (PBS), air dried, and then stained with 200 μl of 0.1% (wt/vol) crystal violet for 15 min. After incubation, the stained plates were washed four times with distilled water to remove excess crystal violet, and the stained biofilms were solubilized with 200 μl of 80% ethanol. The absorbance (540 nm) was measured with a SpectraMax i3x spectrophotometer (Molecular Devices). For each experiment, the absorbance of the blank control with crystal violet was subtracted from the experimental sample. Three replicates were used in each experiment, and three independent experiments were performed. Biofilm production was classified as low, medium, or high as previously described (62 (link)).
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9

Crystal Violet Assay for Cell Viability

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Cell viability after PAM‐LTx treatment was determined by crystal violet assay. PC12 cells were seeded in 6‐ or 12‐well plates at a density of 7,500 cells/cm2 and differentiated with NGF. After treatment, cells were gently rinsed, fixed, and stained with crystal violet solution as stated before (Padilla et al., 2011). Bound crystal violet was dissolved with 10% acetic acid and the optical density (OD) at 570 nm was determined using a Spectra Max i3X spectrophotometer (Molecular Devices). Cell viability was calculated as average percent of the OD reading relative to that of control group, which was normalized to 100%.
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10

Quantifying Mechanical Stress on Cells

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An LDH assay was used as previously described (Mugisho, Rupenthal et al. 2018) to assess the degree of mechanical stress that US may place on cells. LDH may be released by cells via pores induced by sonoporation or other openings due to cellular injury. Briefly, following US administration, samples were re-incubated and 50 µl aliquots of the medium were withdrawn 30 min and 2 h after, respectively. The amount of LDH released into the cell culture medium was measured using an LDH assay kit according to manufacturer instructions. Absorbance was measured at 490 nm using a SpectraMax i3x spectrophotometer (Molecular Devices, San Jose, CA, USA).
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