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12 protocols using prl cmv renilla luciferase plasmid

1

Plasmid Constructs for Mouse In Vivo Studies

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The constructs used for mouse injection including pT3-EF1α, pT3-EF1α-c-Met, pT3-EF1α-β-cateninS45Y (with N-terminal Myc tag), pT3-EF1α-∆N90-β-catenin (with N-terminal Myc tag), and pCMV/sleeping beauty transposase (pCMV/SB) have been described previously [15 (link), 17 (link)]. All the plasmids used for in vivo experiments were purified using the Endotoxin free Maxi prep kit (Sigma-Aldrich, St.Louis, MO) before being injected into the mice. Super 8× TopFlash and Super 8× FopFlash plasmids were obtained from Addgene (plasmid 12,456, plasmid 12,457); and pRL-CMV Renilla luciferase plasmid was purchased from Promega (Madison, WI).
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2

NF-κB, ISRE, and IFNβ Promoter Assays

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Dual-luciferase reporter assays were performed in HEK293T cells to detect the effects of oyster proteins on transcription from the NF-κB, ISRE, and IFNβ promoters using Myc-fused protein expressing vectors. Briefly, cells in 24-well plates (Corning, USA) were transfected with 0.1 μg of reporter gene plasmids, 0.01 μg of pRL-CMV Renilla luciferase plasmid (Promega), and varying amounts of expression plasmids or empty expression vectors (as controls). The pRL-CMV Renilla luciferase plasmid was used as an internal control. At 24–48 h post transfection, the Dual-Luciferase Reporter Assays System (Promega) was used to measure the activity of firefly and Renilla luciferase according to the manufacturer’s instructions. Experiments were performed in triplicate.
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Plasmids for Mouse Liver Studies

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The plasmids used for mouse injection, including pT3-EF1α, pT3-EF1α-c-Met (human c-Met or hMet), pT3-EF1α-β-CateninS45Y, pT3-EF1α-ΔN90-β-Catenin, pT3-EF1α-dnRBPJ (with N-terminal V5 tag), phosphorylated cytomegalovirus (pCMV), pCMV-Cre, and pCMV/sleeping beauty transposase, have been described in our publications.(12 (link)–14 (link)) pX330-U6-Chimeric_BB-CBh-hSpCas9 (pX330) and pLentiCRISPRv2_Puro plasmids were obtained from Addgene (#42230 and #98290, respectively). To delete Axin1 in the mouse liver, we constructed pX330 plasmids expressing single-guide RNAs (sgRNAs) against mouse Axin1 (NM_001159598.1). To delete AXIN1 in human or mouse liver tumor cells, we cloned sgRNAs against human AXIN1 (NM_003502.3) or mouse Axin1 into pLentiCRISPRv2_Puro vectors. Additional plasmids, including shβ-Catenin/pLKO.1 (#18803), Super 8x TopFlash (#12456), and Super 8x FopFlash (plasmids #12457), were obtained from Addgene. pRL-CMV Renilla luciferase plasmid was purchased from Promega (Madison, WI). Detailed information about each plasmid is included in Supporting Table S1. All plasmids for in vivo studies were purified using the Endotoxin free Maxi prep kit (Sigma-Aldrich, St. Louis, MO).
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Wnt Signaling Reporter Plasmids

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TOP-flash - luciferase reporter plasmid containing multiple copies of an optimal TCF-binding site was purchased together with FOP-flash (mutated plasmid) from Addgene (Cambridge, MA, USA). pRL-CMV - renilla luciferase plasmid was obtained from Promega (Madison, WI, USA). For knockodown experiments pLKO.1.sh.beta-catenin.2279, a vector containing shRNA sequence against β-catenin (Addgene plasmid # 19762), and pLKO.1 puro, an empty control vector for RNAi approach (Addgene plasmid # 8453), were used.
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5

Constructing PKD3 Promoter-Luciferase Reporter

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To generate a PKD3 promoter-luciferase reporter, the human PRKD3 promoter region (-1000 to +3) was cloned in pGL3 plasmid from Promega (Madison, WI) via Bgl II and Xho I restriction sites, using 5’-TTTTTTGTCCCTTCTGTTTTTGAT-3’ and 5’-GACGGAAAGAAATTAGAAAATTTT-3’ as primers. The pRL-CMV-renilla luciferase plasmid was from Promega. The ERα (pEGFP-C1-ERα; #28230) expression plasmid was from Addgene (Cambridge, MA). The pSuper-PKD2-shRNA plasmid was obtained by cloning the oligonucleotides 5’-GATCCCCGTTCCCTGAGTGTGGCTTCTTCAAGAGAGAAGCCACACTCAGGGAACT TTTTGGAAA-3’ and 5’-AGCTTTTCCAAAAAGTTCCCTGAGTGTGGCTTCTCTCTTGAAGAAGCCACACTCAG GGAACGGG-3’ into pSuper. GenJet™ from SignaGen (Rockville, MD) was used for transfection of breast cancer cells.
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6

LGALS1 Promoter-Enhancer Reporter Assay

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To generate LGALS1 promoter‐enhancer reporter constructs,11, 12, 13 three fragments spanning nucleotides −500 bp to +67 bp from the LGALS1 transcription start site (promoter region), +450 bp to +1750 bp (enhancer region), and AP‐1 site (TGACTCA)‐mutated enhancer region were synthesized and sequenced by Integrated DNA Technologies, and subcloned into the pGL4 promoterless reporter vector (Promega), generating pGal, pGal + AP‐1 and pGalΔAP‐1. The pRL‐CMV Renilla luciferase plasmid (Promega) was used as internal control. The Dual‐Luciferase Reporter Assays System (Promega) was used to measure the activity of firefly and Renilla luciferase. Cells were transfected with plasmid DNA using Lipofectamine LTX with Plus Reagent (Thermo Fisher Scientific) following the manufacturer's protocols.
The Pathway Profiling SEAP System (TAKARA BIO) was utilized to detect pathways in response to corticosteroids following the manufacturer's recommendations. After transfection, the medium was collected, and secreted alkaline phosphatase was measured using the chemiluminescent alkaline phosphatase detection kit Great EscAPe™ SEAP (TAKARA BIO) according to the manufacturer's procedures.
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7

TEAD Luciferase Assay in Liver Cancer Cell Lines

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SNU-449 and HLE Cells were plated in triplicate in 24-well plate at 70–80% confluency and were co-transfected with 500ng of TEAD luciferase reporter plasmid (8xGTIIC-luciferase, Addgene plasmid #34615), 20ng of pRL-CMV Renilla luciferase plasmid (Promega, Madison, WI) and 1μL Lipofectamine 2000 per well (Invitrogen). The culture medium was replaced by Opti-MEM® Reduced Serum. After 4-hour incubation, the transfection mixture was replaced by culture medium with 0.1%DMSO, 10μM XAV-939, or 10μM G007-LK. At 48 hours, the cells were rinsed in 1X PBS and harvested with Passive Lysis Buffer in a new tube on ice. Luciferase activity was measured using the Dual-Luciferase® Reporter Assay System (Promega), according to the manufacturer’s protocol.
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8

Dual-Luciferase Reporter Assay for NF-κB, TNFα, ISRE, and IFNβ Promoter Activity

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Dual-luciferase reporter assays were performed in HEK293T cells to detect the effects of oyster IKKα/β-2 protein on transcription from the NF-κB, TNFα, ISRE, and IFNβ promoters using Myc-fused protein expressing vectors. Briefly, cells in 24-well plates (Corning, USA) were transfected with 0.1 μg of reporter gene plasmids, 0.01 μg of pRL-CMV Renilla luciferase plasmid (Promega), and varying amounts of expression plasmids or empty expression vector (as a control). The pRL-CMV Renilla luciferase plasmid was used as an internal control. At 24–48 h post-transfection, the Dual-Luciferase Reporter Assays System (Promega) was used to measure the activities of firefly and Renilla luciferases according to the manufacturer's instructions. Experiments were performed in triplicate.
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9

LGALS1 Promoter Luciferase Assay

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Human LGALS1 promoter (−500 bp to +67 bp from the LGALS1 transcription start site)11, 16, 17 was synthesized and sequenced by Integrated DNA Technologies and subcloned into the pGL4 vector (Promega). Luciferase reporter construct containing 3 consensus hypoxia‐responsive elements (HREs) was obtained from Addgene. The pRL‐CMV Renilla luciferase plasmid (Promega) was used as an internal control. The dual‐luciferase reporter assays system (Promega) was used to measure the activity of firefly and Renilla luciferase. Cells were transfected with plasmid DNA was transfected using Lipofectamine LTX with Plus Reagent (Thermo Fisher Scientific) following the manufacturer's protocols.
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10

Luciferase Assay of LGALS1 Regulation

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The luciferase reporter experiments were performed using the Dual-Luciferase Reporter Assays System (Promega Corporation, Madison, WI, USA). RPE cells were transfected with the pGL4 vector containing one of three fragments spanning nucleotides –500 bp to +67 bp from the LGALS1 transcription start site (promoter region; pGal), +450 bp to +1750 bp (enhancer region; pGal+AP-1), and AP-1 site (TGACTCA)-mutated enhancer region (pGalΔAP-1), as previously described.14 (link),15 (link) Mutation in two HRE sites in the LGALS1 promoter region (CACGC to CAAAC, positions at –441 bp to –437 bp and –427 bp to –423 bp)8 (link),12 (link) was synthesized and sequenced by Integrated DNA Technologies (Coralville, IA, USA), and subcloned into the pGL4 vector (pGalΔHRE). The pRL-CMV Renilla luciferase plasmid (Promega) was used as internal control. Cells were transfected with plasmid DNA using Lipofectamine LTX with Plus Reagent (Thermo Fisher Scientific) following the manufacturer's protocols.
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