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31 protocols using spd m20a photodiode array detector

1

Rat Brain Enzyme Separation

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Enzymes present in the rat brain homogenate were separated on the ion-exchange column Econo-Pac High Q (resin volume: 5 mL; Bio-Rad, Berkeley, CA, USA). Gradient separation was performed by the HPLC system Prominence LC-20 AD with a Photodiode Array Detector SPD-M20A (Shimadzu, Tokyo, Japan). The sample volume loaded on the column was 1 mL. The mobile phase consisted of 20 mM Tris–HCl buffer, pH 7.5, and a gradient of NaCl from 0 to 500 mM in 60 min was used. The total flow rate was 1 mL/min. One-point-five-milliliter fractions were collected during the separation and stored in −80 °C prior to further experiments.
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2

Carotenoid Extraction and Identification in E. coli

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Under dim light, carotenoids were extracted from E. coli cells with 1 ml of acetone. After centrifugation, the extracts were dried using a rotary evaporator. Carotenoid extracts were dissolved in 1 ml of ethyl acetate and filtered using a Columngard-LCR13 (Merck) prior to HPLC analysis. Fifteen microliters of extracts were analyzed in an HPLC system equipped with a PEGASIL ODS SP100 column (6 mM × 150 mM, 5 μm particles, Senshu Scientific, Tokyo, Japan). The mobile phase was acetonitrile/methanol/tetrahydrofuran (58:35:7, v/v/v) at a flow rate of 0.8 mlmin−1. Absorbance spectra (250–700 nm, 1.2-nm resolution) and retention times were recorded for 50 min using a Photodiode Array Detector SPD-M20A (Shimadzu, Kyoto, Japan).
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3

Quantification of β-lactoglobulin and Lysozyme

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For quantification of β‐lactoglobulin and lysozyme and for determination of labelling efficiency, reversed‐phase (RP)‐HPLC was performed on a Shimadzu Prominence RP‐HPLC system equipped with a SPD‐M20A Photodiode Array Detector (Shimadzu, Japan) and a RF‐20A Fluorescence Detector (Shimadzu, Japan). Each sample was injected in triplicates (injection volume 10 μl) on a C18 column (C18 250 × 4.6 mm, 5 μm; AnalyticShop) and eluted in a binary gradient of H2O:TFA 99.9:0.1 v/v (Mobile Phase A) and CH3CN:TFA 99.9:0.1 v/v (Mobile phase B) at a flow of 0.5 ml/min at 40°C temperature. The gradient used, expressed in the concentration of the mobile phase B was: 0—2 min. – 0%; 2—10 min. – 90%; 10—15 min. – 90%; 15—17.5 min. – 0%; 17.5‐20 min. – 0%. The UV‐Vis absorbance at 280 nm from the DAD detection as well as fluorescence were recorded (dual wavelength mode: Ex./Em. 555/580 nm for TMR and 750/773 nm for Cy7; the detector sensitivity was set to medium).
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4

Carotenoid Analysis via HPLC

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Under dim light, pigments were extracted twice from cells with 1 ml of acetone/methanol (7:2, v/v) immediately before HPLC analyses. After centrifugation, extracts were dried with a rotary evaporator. The residue was dissolved in chloroform/methanol (3:1, v/v) and then analyzed with an HPLC system equipped with Mightysil RP-18 GP analytical column (4.6 mm × 150 mm, 5 μm particles, Kanto Chemical, Tokyo, Japan) and guard column (4.6 mm × 5 mm, 5 μm particles, Kanto Chemical, Tokyo, Japan). The elution conditions were as follows: 0–10 min, linear gradient from 90% methanol/H2O (v/v) to 100% methanol; 10–50 min, isocratic 100% methanol at 1.0 ml min−1. Absorbance spectra (250–700 nm, 1.2 nm resolution) and retention times were recorded with an SPD-M20A Photodiode Array Detector (Shimadzu, Kyoto, Japan).
The composition of the major carotenoids was calculated from these molar absorption coefficients and areas under the peak in the chromatogram of absorbance at 445 nm. Relative carotenoid content per cell was calculated by normalizing molar ratios of major carotenoid species to chlorophyll a (carotenoids/chlorophyll a) based on absorbance at 445 nm in HPLC analysis with chlorophyll a content per cell (mol cell−1) determined as described above.
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5

Reverse-Phase HPLC Purification of Pigments

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A reverse phase HPLC system composed of the following modules was used: LC-6AD pumps, CBM-20A communication module, SIL-20A HT autosampler, CTO-20A column oven, and SPD-M20A Photodiode Array detector (Shimadzu, Columbia, MD, USA). The reverse-phase column selected was a 250 × 21.2 mm Luna pentafluorophenyl column with 5 µm particle size and 100 Å pore size (Phenomenex, Torrance, CA, USA). Samples were filtered prior to injection with a Phenex RC 0.45 µm, 15 mm membrane syringe filter (Phenomenex, Torrance, CA, USA). With a flow rate of 10 mL/min and a run time of 30 min, peaks were separated and collected. An isocratic system with the following solvents were used: 11:89 (Solvent A: Solvent B v/v) with Solvent A being 4.5% formic acid in HPLC grade water and Solvent B was HPLC grade acetonitrile. Elution of peaks was monitored at 500 nm. Peaks were manually collected. The two collected peaks were diluted with distilled water and again subjected to SPE semi-purification to remove formic acid and acetonitrile. Rotary evaporation was used to remove methanol (40 °C, under vaccuum), and the pigments were stored in 0.01% HCl in acidified water.
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6

Polymer Characterization by SEC-MALS

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The weight-average molecular weight Mw, number-average molecular weight Mn and dispersity Ð of polymer precursors and conjugates were measured using SEC on a HPLC Shimadzu system equipped with a SPD-M20A photodiode array detector (Shimadzu, Japan), differential refractometer (Optilab®rEX), and multiangle light scattering (DAWN HELLEOS II) detectors (both from Wyatt Technology Co., USA). The mobile phase for the TSKgel SuperSW3000, TSKgel3000AW+TSKgel4000AW combination and TSKgel4000SWxl columns was a mixture of methanol:sodium acetate buffer (CH3COONa:CH3COOH; pH = 6.5) (80 : 20; v:v); the flow rate was 0.3 mL min−1 for TSKgel SuperSW3000, 0.6 mL min−1 for TSKgel3000AW+TSKgel4000AW and 0.5 mL min−1 for TSKgel4000SWxl.
The hydrodynamic diameter (Dh) of the conjugates was measured by dynamic light scattering (DLS) (Nano-ZS, Malvern) in a 0.15M NaCl solution at polymer concentration 5 mg mL−1. Nanoparticle tracking analysis (NTA) was performed using NS 300 instrument. NTA is an image analysis method based on Brownian motion of nanomaterial, therefore one can see the uniformity as well as the shape pattern of nanomaterials.
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7

HPLC Analysis of Dynantin Compounds

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All analyses were performed using a Shimadzu Prominence series HPLC system (Shimadzu Corporation, Kyoto, Japan), equipped with an LC-20AB binary pump (Serial: L20124200883), SIL-20A HT autosampler (Serial: L20345256104), CTO-20AC temperature-controlled column oven (Serial: L2021525077), SPD-M20A photodiode array detector and CBM-20A communications bus (Serial: L20235154327). All equipment were controlled by Shimadzu Lab Solutions Lite software version 5.71 SP2. For separation, an Ultra C18 column, 3 μm, 50 × 4.6 mm (RESTEK Corporation, Bellefonte, PA) was used. Dynantin samples were analyzed at a constant solvent flow rate of 0.7 mL/min at 35 °C using a binary gradient (Table 1). Solvent A consisted of a 25% solution of acetonitrile (HPLC grade, Fisher Scientific, Fairlawn, NJ, USA) in ddH2O (0.2 μm filtered) and solvent B consisted of acetonitrile with each solvent containing 0.1% trifluoroacetic acid (v/v, protein sequencing grade, Sigma Aldrich, Fairlawn, NJ, USA).
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8

HPLC-MS/MS Analysis of Analytes

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A prominence UFLC system from Shimadzu (Kyoto, Japan) equipped with a CBM-20A Communication Bus Module, SPD-M20A Photodiode Array Detector, LC-20AD Pump, SIL-20A Autosampler, and CTO-20A Column Oven was used. After a 10 μL injection, the analytes were separated through a Hector-M C18 column (4.6 × 250 mm, 5 μm) from RStech (Daejeon, Korea) using mobile phase (A) 0.1% formic acid in water and (B) 0.1% formic acid in acetonitrile at a flow rate of 0.3 mL/min. The elution started at 0% B for 20 min and then was increased to 100% B for 110 min. The eluents were then detected by the LCMS-8040 system (Shimadzu) with an ESI interface source in positive and negative mode at 3.5 and −3.5 kV interface voltage, respectively. The MS source conditions were as follows: nebulizing gas flow rate, 3 L/min; desolvation line temperature, 250 °C; drying gas flow, 15 L/min; and heat block temperature, 400 °C.
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9

Photosynthetic Pigment Analysis by HPLC

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The photosynthetic pigments were extracted from cell pellets in 90% (v/v) methanol and analyzed by high performance liquid chromatography (HPLC) in a LC-20AT High Pressure Liquid Chromatographer with a SPD-M20A Photodiode Array Detector (Shimadzu, Japan) as described in [15 (link)]. Pigments were identified by comparing retention times and absorption spectra with standard pigments (DHI, Hørsholm, Denmark), and their concentration determined via external authentic standards.
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10

Molecular Weight Characterization of Ligands

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A Shimadzu HPLC system equipped with a size exclusion chromatography (SEC) column was used to determine the molecular weights (number-average molecular weight, Mn, and weight-average molecular weight, Mw), and dispersity (Đ) of ligands 46. Measurements were performed using 0.3 M sodium acetate buffer (pH 6.5) as a mobile phase for Superose 6 (10 × 300 mm) at a flow rate of 0.5 mL min−1. Poly(HPMA-co-MA-AP-TT) polymer precursor used for preparing ligands 46 was measured in methanol/0.3 M sodium acetate buffer (pH 6.5, 4/1, v/v) using a TSKgel Super SW3000 (4.6 × 300 mm) at a flow rate of 0.3 mL min−1. A multiangle light scattering (MALS) detector (DAWN HELEOS II, Wyatt Technology Co., USA), Optilab-rEX differential refractometer index (RI) detector and SPD-M20A photodiode array detector (Shimadzu, Japan) were employed.
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