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76 protocols using a7811

1

Immunofluorescent Staining of Cardiomyocyte Markers

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Cells isolated from neonatal rats were immunofluorescently stained with the cardiomyocyte-specific markers cardiac troponin I (cTnI) and cardiac muscle alpha-actin. Cells were fixed with 4% paraformaldehyde (Fisher Scientific) for 15 min, permeabilized with 0.1% Triton X-100 (Sigma‒Aldrich), and then blocked with 1% bovine serum albumin (BSA) for 1 h. Subsequently, the cells were incubated with mouse anti-α-actin antibody (A7811, Sigma) diluted 1:100 and rabbit anti-cTnI antibody (ab228847, Abcam) diluted 1:500 at 4 °C overnight. Then, the cells were stained with the following secondary antibodies: 1:200 diluted Alexa Fluor 488-labeled goat anti-mouse IgG (ab150113, Abcam) and 1:200 diluted Alexa Fluor 647-labeled goat anti-rabbit IgG (ab150079, Abcam). 6-Diamidino-2-phenylindole (DAPI) was used for nuclear counterstaining. Images were observed with a confocal microscope (Olympus FV3000, Japan).
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2

Immunofluorescent Staining of Cardiomyocytes

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Cells were fixed with 3–4% paraformaldehyde for 15 min at room temperature and then washed three times with PBS. Cells were permeabilized with 0.3% Triton X-100 for 10 min prior to another three washes with PBS. Cells were blocked with 5% BSA for 30 min and then incubated with primary antibodies diluted in 5% BSA O/N at 4°C. Anti-Cardiac Troponin T rabbit polyclonal antibody (ab45932, Abcam) was added at a 1:400 dilution. Anti-alpha-Actinin (Sarcomeric) mouse monoclonal antibody (A7811, Sigma) was added at a 1:500 dilution. After primary antibody incubation, cells were washed with 0.1% Tween-20 in PBS three times. Secondary antibodies, donkey anti-Rabbit IgG Alexa Fluor 594 (A21207, ThermoFisher Scientific), and Donkey anti-Mouse IgG Alexa Fluor 488 (A21202, ThermoFisher Scientific), were added at a 1:1000 dilution in 2.5% BSA for 1 hr at room temperature. Cells were washed three times with PBS prior to counter-staining with Hoechst for 10 min.
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3

Quantitative Western Blot Analysis Protocol

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Total proteins were extracted by RIPA buffer containing protease inhibitor as previously reported (Sun et al, 2016; Zhang et al, 2017). Samples were separated by SDS–PAGE and then transferred to PVDF membranes. After primary and secondary antibody incubation, protein expression was visualized using ECL Western Blotting Substrate (Thermo Fisher Scientific) and quantified using ImageJ software. The primary antibodies were anti‐Actin (1:2,000, A7811, Santa Cruz), anti‐α‐Actinin (1:1,000, A7811, Sigma‐Aldrich), anti‐Flag (1:1,000, F3165, Sigma‐Aldrich), anti‐GFP (1:1,000, A10262, Thermo Fisher Scientific), anti‐HA (1:1,000, H3663, Sigma‐Aldrich or 3724, Cell Signaling), anti‐HDAC9 (1:200, sc‐398003, Santa Cruz; Schroeder et al, 2018), anti‐MEF2a (1:200, sc‐17785, Santa Cruz; Reineke et al, 2014), anti‐NCoR1 (1:500, 5948, Cell Signaling; Simcox et al, 2015), and anti‐HDAC4 (1:500, ab12172, Abcam or 2072, Cell Signaling; Wein et al, 2016).
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4

Immunofluorescence Staining and Microscopy for Cell Analysis

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Cells were fixed in 4% paraformaldehyde and permeabilized in 0.1% Triton X-100 before blocking in 10% normal goat serum/1% BSA (Millipore Sigma). Cells were incubated with primary antibodies (α-actinin [1:200; A7811; Sigma-Aldrich], cardiac troponin T [1:100; ab45932; Abcam], KI67 (1:200; ab8330; Abcam], PHH3 [1:200; 9701; Cell Signaling Technology], and Aurora B kinase [1:100; ab2254; Abcam]) overnight, and detection was mediated by incubation with secondary antibodies (Alexa Fluor antibody conjugates; Thermo Fisher Scientific) for 1 h. DAPI was used as a nuclear marker. Mounting was performed using Fluoromount-G mounting medium (Thermo Fisher Scientific).
To determine cell loss via pathways involving DNA fragmentation, TUNEL assays (Roche) were performed according to the manufacturer’s instructions. In vitro proliferation after FSTL1 supplementation was assessed using Click-iT EdU incorporation kit (Life Technologies). Imaging was performed using a confocal microscope (Leica SP8 X) and image analysis using ImageJ.
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5

Immunostaining of Cardiac Tissue Sections

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Frozen heart sections embedded in OCT compound (Tissue-Tek; Sakura, UAE) were cut into 8 μm sections with a cryostat (Leica, Germany), permeabilized, blocked with Blocking-One (Nacalai Tesque, Japan), and labeled with primary antibodies, followed by fluorochrome-conjugated secondary antibodies. Counterstaining for DAPI (nuclei), phalloidin (F-actin), and wheat germ agglutinin (WGA; cell membrane) was also performed. Sections were covered with a fluorescence mounting medium (Dako, USA) and examined using an inverted fluorescence microscope (BZ-X710, Keyence, Japan), or a confocal scanning system mounted on a IX81 inverted microscope (FV-1000, Olympus, Japan) (Hashimoto et al., 2018 (link)). The primary antibodies used were for Ki67 (clone SP6, Abcam, UK), phospho-histone H3 at Ser-10 (06-570, EMD Millipore, USA), PCM-1 (HPA023370, Sigma-Aldrich), sarcomeric α-actinin (A7811, Sigma-Aldrich), and the FLAG tag (F1804, Sigma-Aldrich). When using mouse-derived antibodies, the Mouse on Mouse (M.O.M.) Basic Kit (Vector, CA, USA) was used. Essentially the same staining protocol was applied for CMs from aged mice isolated with a fixation digestion method (see below). In freshly isolated fetal CMs, fixation was done with 4% paraformaldehyde before permeabilization.
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Immunostaining of Cardiomyocyte Cytoskeleton

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NRVMs cultured on glass coverslips were fixed in paraformaldehyde for 15 min and then washed for three times with 1XPBS. After incubation with blocking solution (5% goat serum and 0.3% Triton X‐100 in 1X PBS) for 1 h, NRVMs were stained with anti‐actinin (1:500, A7811, Sigma‐Aldrich) overnight. Subsequently, NRVMs were incubated with secondary antibodies (1:1,000, A11005 or A11031, Thermo Fisher Scientific). Coverslips were finally mounted with ProLong® Gold Antifade Reagent with DAPI (P36931, Thermo Fisher Scientific). Images were captured using fluorescence microscope. Surface areas of NRVMs were quantified by ImageJ software. Cytosolic localization of HDAC4 and HDAC5 was calculated and presented as percentage (Toth et al, 2018).
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7

Immunofluorescent Staining of Cultured Cells

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Cultured cells were fixed with 4 % paraformaldehyde for 15 min, washed twice with PBS, and subsequently permeabilized with 0.5 % Triton X-100 (X100; Sigma-Aldrich) for 10 min. The washed cells were blocked for 30 min at room temperature with 1 % BSA (A9418; Sigma-Aldrich), and then incubated overnight at 4 °C with primary monoclonal mouse anti-alpha-actinin (A7811; Sigma-Aldrich) antibody diluted in 0.2 % BSA solution. After three serial washes with PBS, cells were incubated with AlexaFluor 594 conjugated goat anti-mouse antibody for 1 h at room temperature, and then washed and incubated in 300 nM DAPI for 5 min for nuclear counterstain.
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8

Immunohistochemical Analysis of Cardiac Tissue

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For immunohistochemistry staining, heart cryosections were fixed with 4% paraformaldehyde, permeabilized and blocked with Protein Block Solution (DAKO, Carpinteria, CA) containing 0.1% saponin (Sigma, St Louis, MO), and then incubated with the following antibodies overnight at 4 °C: mouse anti-alpha sarcomeric actin (1:100, a7811, Sigma), rabbit anti-CD45 (1:100, ab10559, Abcam, Cambridge, United Kingdom), mouse anti-Actin, α-Smooth Muscle antibody (1:100, A5228, Sigma), rabbit anti-Ki67 (1:100, ab15580, Abcam), rabbit anti-CD3 (1:100, ab16669, Abcam) and mouse anti-CD8 alpha (1:100, mca48r, abd Serotec, Raleigh, NC ). FITC- or Texas-Red secondary antibodies (1:100) were obtained from Abcam Company and used for the conjunction with these primary antibodies. For assessment of cell apoptosis, heart cryosections were incubated with TUNEL solution (Roche Diagnostics GmbH, Mannheim, Germany) and counter-stained with DAPI (Life Technology, NY, USA). For assessment of angiogram, heart cryosections were incubated with Lectin (FL-1171, Vector laboratories, Burlingame, CA, USA). Images were taken by an Olympus epi-fluorescence microscopy system.
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9

Immunofluorescence and Flow Cytometry Analysis

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Immunofluorescence staining and flow cytometry were performed as previously described (18 (link)). Primary antibodies (table S5) were used at the following dilutions: rabbit anti-GFP (Invitrogen, A11122; 1:500), chicken anti-GFP (Abcam, ab13970; 1:1500), anti-αActinin (Sigma-Aldrich, A7811; 1:500), anti-Cx43 (Sigma-Aldrich, C6219; 1:200), anti-Lamp1 (Abcam, ab25245; 1:200), and anti–β-catenin (Abcam, ab16051; 1:200). Secondary antibodies including Alexa Fluor 488–conjugated donkey anti-rabbit IgG, Alexa Fluor 488–conjugated donkey anti-chicken IgG, Alexa Fluor 647–conjugated donkey anti-mouse IgG, cyanine Cy3-conjugated donkey anti-rabbit IgG, and cyanine Cy3-conjugated donkey anti-mouse IgG were all from Jackson ImmunoResearch Inc. Images were captured using EVOS FL Auto Cell Imaging System (Life Technologies). For quantification, 10 to 20 images were randomly taken under ×10 or ×20 magnifications at the same exposure setting and then counted in a double-blinded way. For flow cytometry, iCMs on d10 were harvested by trypsin digestion at 37°C for 5 min. Cells were fixed, permeabilized, probed for αMHC-GFP and cTNT, and then analyzed on a BD Accuri C6 or Cyan flow cytometer. FlowJo software (Tree Star) was used to analyze flow cytometry data.
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10

Evaluating NRCM Proliferation and Apoptosis

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NRCMs were derived from SD rats as previously described (65 ). We cultured NRCMs on four-well chamber slides. Small pieces (1 mm2) of fresh artCP, cryopreserved artCP, myoECM, or 1.2 μl of synCSC solution (7 × 106/ml; synCSCs suspended in sterilized PBS) were added into NRCM culture chamber for 3 days. An NRCM culture without any additions to the media (standard culture conditions) was included as a control. Cell proliferation was evaluated by the percentage of sarcomeric α-actinin–positive (α-SA+) (1:100; a7811, Sigma-Aldrich)/Ki67+ (1:100; ab15580, Abcam) NRCMs. For assessment of cell apoptosis, the cells were incubated with TUNEL solution (Roche Diagnostics GmbH) and counterstained with 4′,6-diamidino-2-phenylindole (DAPI) (Life Technologies, NY, USA). A LIVE/DEAD Viability/Cytotoxicity Kit (Thermo Fisher Scientific) was used to determine the cell viability of NRCMs. Images were taken with a confocal fluorescence microscope (ZEISS LSM 880). Tissue morphology was characterized by images using the NIH ImageJ software and ZEN lite software.
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