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59 protocols using elx808 absorbance reader

1

Quantifying Serum IgE and IgG4 Levels

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Total IgE and IgG4 in all participant’s sera were analyzed using human Platinum ELISAs, Ready-to-use Sandwich with 96-well strip plates [eBioscience, ThermoFisher Scientific] according to the manufacturers’ instructions. Absorbance of the ELISA reaction product was measured with a microplate reader [ELx808 absorbance reader, BioTek] at 450 nm, and the concentrations were determined from a standard curve included on each plate.
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2

Cell Viability Assessment by MTS Assay

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Cell viability was determined using an MTS kit (Promega Corporation, Madison, WI, USA). SK-N-SH cells were seeded at a density of 4,000 cells/well and treated in 96-well plates for various durations. Following 24 h culture, the cells were washed with PBS three times and fresh DMEM medium (100 µl) and MTS (20 µl) reagent were added to the wells for 1 h at 37°C in the dark (25 (link),26 (link)). The absorbance was measured at a wavelength of 490 nm on an ELx808 absorbance reader (BioTek Instruments, Inc., Winooski, VT, USA). To eliminate possible interference by alcohol, cells treated with the same concentrations of alcohol (0, 50, 100, 200 and 400 mM) and memantine (4 µM) but without addition of assay reagents were used as blank controls. All experiments were repeated at least five times.
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3

Quantifying Antioxidant Levels in HUVECs

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HUVECs at a density of 1 × 105 cells/well were cultured in 96-well plates at 37°C with 5% CO2 for 24 hours. Cell culture supernatant was then collected, and GSH, GPX, and SOD levels were quantified using the corresponding ELISA kits purchased from R&D (San Diego, CA, USA) [40 (link)]. OD values at 450 nm absorbance were measured using an ELX808 Absorbance Reader (BioTek, London, UK) [41 (link)].
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4

Quantifying Calcium, Phosphate, and Protein

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The total calcium concentration in all solutions was determined using an atomic absorption spectrometer (AAS; AAnalyst 400, Perkin Elmer Analytical Instruments, Waltham, MA, USA). Lanthanum nitrate (0.5%, lanthanum nitrate hexahydrate: La(NO3)3·6H2O) was added to the solution to eliminate the interference of other ions14 (link).
The inorganic phosphate concentration was analysed photometrically using the method reported by Chen et al.15 (link). From the test solution, an aliquot was diluted with ultra-pure water, and 2 ml of this dilution was mixed with 2 ml of a phosphate reagent (2% ascorbic acid, 0.5% ammonium heptamolybdate, 0.6 M H2SO4). This mixture was stored for 90 min at 37 °C, allowed to cool to 24 °C, and then absorbance was measured at 820 nm using a spectrophotometer.
The total protein concentration was determined colorimetrically using a PierceTM BCA Protein Assay Kit (Thermo Scientific) with bovine serum albumin (BSA) as a standard. The assay was performed in a 96-well micro plate using triplicates of 25 µl of each sample and standard. The plates were read at 570 nm using an ELx808 Absorbance Reader (BioTek).
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5

Determining Cell Proliferation Kinetics

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CMT-1026 was diluted to different concentrations to provide a normal curve diagram (34 (link)). Cells were seeded in triplicate in 96 well plates. After 24 h of cultivation, CMT-1026 cells were treated in triplicate with a Cell Counting Kit for 4 h (CCK-8, Beyotime, Shanghai, China) and then detected at 24 h intervals for 9 days. Then the different concentrations were determined with a 450 nm filter and a microplate reader (ELx808 Absorbance Reader, BioTek, USA). When cell growth was in the exponential phase, the CMT-1026 doubling time was calculated with GraphPad Prism 8 software (GraphPad Software, Inc. USA).
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6

Quantifying Mouse β-Defensin-3 by ELISA

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Mouse β-defensin-3 were measured by ELISA (MyBioSource, MBS034940, San Diego, CA, US) according to manufacturer’s instructions. Briefly, each sample was separately weighted, and PBS was added accordingly (10 µl/mg of sample). Then, samples were mechanically homogenized with 3.0 mm ceramic beads (Sigma, USA) in a bullet homogenizer (Next Advance, NY USA). The samples were homogenized for 10 min at maximum speed, followed by centrifugation at 3000 rpm for 20 min. The supernatants were then collected and loaded on the ELISA plate with blanks and standards. Each sample was run in duplicate. Optical density was read at 450 nm using ELx808 absorbance reader (BioTek, Winooski, VT, USA), and the results were expressed in pg/ml.
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7

Generation and Validation of Knockout Strains

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Bacterial strains and primers used in this study are listed in the Key resources table. E. coli K-12 MG1655 (ATCC 700926) with pyrE/rph 82 bp deletion strain was used as the wild-type (WT) strain (Anand et al., 2019a (link)). P1 phage transduction method was used to generate the knockout strains (Thomason et al., 2007 ) and strain from Keio collection was used as a donor for the gene knockout cassettes (Baba et al., 2006 (link)). The point mutation in the pre-evolved ΔpdhR strain was introduced using a genome editing method based on the CRISPR/Cas9 system (Zhao et al., 2016 (link)). We used ALE-2 (evolved ΔpdhR strain) to amplify the donor construct bearing the desired mutation. The oligos used for this purpose are listed in the Key resources table. Amplification-Refractory Mutation System (ARMS) was used for colony screening (Little, 2001 ) and the screened colonies were further verified by Sanger sequencing. BioTek Elx808 Absorbance Reader was used for the growth profiling with 200 μL culture volume per well using a minimum of three biological replicates. Media components were purchased from Sigma-Aldrich (St. Louis, MO).
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8

High-throughput Growth Kinetics Assay

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A 96-well microtiter plate, containing 200 μl MHBII per well, was inoculated with cells in exponential growth phase using a 96-pin replicator. All seven isolated colonies per lineages were included in the growth measurement. OD600 was measured in a ELx808 Absorbance Reader (BioTek) every 5 min for 10 h at 37°C and 650 r.p.m. The data was analyzed with R (Team R Core, 2014 ). The growth rate was calculated based on the steepest part of the growth curve during exponential growth. The doubling time was normalized to the wild type and plotted grouped by drug with the package ggplot (Wickham, 2009 ). To test whether the observed differences in growth rate were significant (P < 0.05) the non-parametric Kruskal-Wallis one-way analysis of variance was applied in R.
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9

CCK-8 Assay for Proliferation

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CCK-8 assay was used to detect the effect of Tan IIA, miR-497-5p mimic or miR-497-5p inhibitor transfection, or the combination on the proliferation of AML cells. In brief, the transfected cells were seeded in 96-well plates at a density of 5 × 104 cells/well in 200 µl culture medium. At appointed time, 10 µl of CCK-8 assay solution (Dojindo Molecular Technologies, Japan) was added to each well, and incubation at 37 °C with 5% CO2 for 2 h, the optical density at 450 nm wavelength was selected for the measurement using an ELx808 absorbance reader (BioTek Instruments, USA).
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10

Evaluating Cell Viability with siRNA-Mediated Knockdown

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Cells were plated at a density of 10,000 cells/well in 96-well plates. On the second day, cells were transfected with 50 nmol siACC1 or siControl. An MTT assay (Sigma-Aldrich; Merck KGaA, Darmstadt, Germany) was used to measure the viability of BRL 3A and Hep G2 cells 24, 48 and 72 h post-treatment with siRNA. Briefly, 10% v/v of 5 mg/ml MTT was added to each well, after which the cells were incubated at 37°C for 4 h. The supernatant was discarded, and 0.2 ml of dimethyl sulfoxide (Sigma-Aldrich; Merck KGaA) was added to each of the wells. The wells were gently agitated for 10 min at room temperature, and the absorbance of each well was measured at 570 nm by an ELx808 absorbance reader (BioTek Instruments, Inc., Winooski, VT, USA) (20 (link)).
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