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Trio system

Manufactured by Siemens
Sourced in Germany

The Trio system is a laboratory equipment product offered by Siemens. It serves as a versatile platform for various analytical and testing applications. The core function of the Trio system is to provide a reliable and consistent platform for conducting experiments and analyses in a controlled laboratory environment.

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62 protocols using trio system

1

fMRI Acquisition Protocol for 3T MRI

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fMRI measurements were performed on a 3 Tesla Trio System (Siemens Medical Solution, Erlangen, Germany) using a 32-channel head coil. Functional images were acquired using an optimized 2D single-shot, gradient-recalled, echo-planar imaging (EPI) sequence, including online distortion correction with point-spread function-mapping (Zaitsev et al., 2004 (link)). Thirty-six slices (2.7 mm thickness, 0.5 mm gap) were acquired, aligned parallel to the AC–PC line, with an echo time (TE)/ repetition time (TR) of 32/2000 ms and a field of view (FOV) of 210 × 210 mm.
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2

Multimodal Neuroimaging Acquisition Protocol

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Anatomical images were acquired on the 3.0T Siemens Trio system in the axial plane parallel to the AC-PC line using a 3D MPRAGE sequence (TE/TI/TR=3.29ms/900ms/2200ms, flip angle=9, isotropic 1mm3 voxel, 192 axial slices, matrix size=256×192). fMRI data were acquired in the axial plane using gradient echo EPI (TR=2000 ms, TE=30 ms, flip angle=70 deg, 30 slices, slice thickness=3.1 mm, 3 mm × 3 mm in-plane, matrix size=64×64).
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3

Multi-modal Neuroimaging Acquisition Protocol

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Functional MRI data were acquired using a Siemens 7T Magnetom system with a 32-channel head coil. Blood oxygenation level dependent (BOLD) fMRI was acquired using a T2*-weighted multislice gradient echo planar imaging (EPI), with true axial slices centered on the left anatomical hand knob in the z-axis (TR 1500 ms, TE 25 ms, slice thickness 1.2 mm, in-plane resolution 1.2 × 1.2 mm, 22 axial slices, GRAPPA factor = 2). One single volume contrast matched EPI acquisition of the same resolution was also acquired for registration purposes. fMRI data acquisition, task and data preprocessing have been detailed previously (Kolasinski et al., 2016 (link)).
Structural MRI data were acquired using a 3T Siemens Trio system during one of the scan sessions with a multi-echo magnetisation prepared rapid acquisition gradient echo (MEMPRAGE) sequence (van der Kouwe et al., 2008 (link)) (TR 2530 ms, TE 1.69, 3.55, 5.41 and 7.27 ms, slice thickness 1.0 mm, in-plane resolution 1.0 × 1.0 mm, GRAPPA factor = 2).
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4

Whole-Head MEG Recordings and MRI Integration

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We used a whole‐head magnetoencephalography (MEG) system with 275 axial gradiometers (VSM/CTF systems, Port Coquitlam, Canada) housed in a magnetically shielded room. MEG recordings were sampled at 1200 Hz with an online 300 Hz low‐pass filter. The signal was down‐sampled to 600 Hz afterwards for off‐line analysis. No additional bandpass filtering was applied for any analysis, in order to preserve the possibility to perform analyses in the whole spectrum. All participants were recorded in the supine position. Coils placed at the nasion and the left and right ear canals were used to measure participants' head location relative to the MEG sensors during the experiment. During the recordings, an Eyelink 1,000 eye tracker (SR Research, Ontario, Canada) was used to monitor eye movements and blinks. Additionally, we used a FASTRAK device (Polhemus, VT) to record the head shape of participants with 300 head points relative to the three fiducial points (nasion and the left and right ear canals). In addition to the MEG recordings, a structural magnetic resonance image (MRI) of the participants' brain was acquired using a 3 T Siemens Trio system (Erlangen, Germany) and with a voxel size of 1 mm3. During the MRI acquisition, earplugs with a drop of Vitamin E in place of the coils were used for co‐registration of the MRI and MEG data.
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5

Functional MRI Acquisition Protocol

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All MR images were acquired by a 3 T Siemens Trio system with a standard 32-channel head coil. The following scanning parameters were used for T2*-weighted echo-planar images (EPI): TR = 2.2 s, TE = 30 ms, FA = 90°, FOV = 200 mm, matrix = 64 × 64, voxel size = 3.4 × 3.4 × 3 mm3. We acquired 36 transversal slices covering the whole brain with a 0.75 mm gap. The functional scanning session resulted in 636 EPI volumes, which lasted for 23.32 minutes. After the functional scanning, high-resolution images (voxel size = 1 × 1 × 1 mm3) of the whole brain were acquired for anatomic co-registration, using a standard T1-weighted 3D sequence (MPRAGE).
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6

Multimodal MRI Protocol for Aphasia

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MRI data were acquired with a 3T Siemens Trio system fitted with a 12-channel head-coil. All subjects with aphasia were scanned with two MRI sequences: (i) T1-weighted imaging sequence using a 3D MP-RAGE (magnetization-prepared rapid-gradient echo) [TFE (turbo field echo)] sequence with voxel size = 1 mm3, FOV (field of view) = 256 × 256 mm, 192 sagittal slices, 9° flip angle, TR (repetition time) = 2250 ms, TI (inversion time) = 925 ms, TE (echo time) = 4.15 ms, GRAPPA (generalized autocalibrating partial parallel acquisition) = 2, and 80 reference lines; and (ii) T2-weighted MRI for the purpose of lesion demarcation with a 3D sampling perfection with application optimized contrasts by using different flip angle evolutions protocol with the following parameters: voxel size = 1 mm3, FOV = 256 × 256 mm, 160 sagittal slices, variable flip angle, TR = 3200 ms, TE = 352 ms, and no slice acceleration. The same slice center and angulation were used as in the T1 sequence.
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7

Structural and Functional MRI Acquisition

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All anatomical images were acquired on a 3.0 T Siemens Trio system in the axial plane parallel to the AC-PC line using a 3D MPRAGE sequence (TE/TI/TR = 3.29 m/900 m/2200 m, flip angle = 9, isotropic 1 mm3 voxel, 192 axial slices, matrix size = 256 × 192). The fMRI data for this experiment were acquired in the axial plane using gradient-echo EPI (TR = 2000 m, TE = 30 m, flip angle = 70 deg, 30 slices, slice thickness = 3.1 mm, 3 mm × 3 mm in-plane, matrix size = 64 × 64) (Soloff et al., 2015 (link)).
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8

3D MRI and Functional MRI Protocol

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All anatomical images were acquired on a 3.0 T Siemens Trio system in the axial plane parallel to the AC-PC line using a 3D MPRAGE sequence (TE/TI/TR = 3.29 m/900 m/2200 m, flip angle = 9, isotropic 1 mm3 voxel, 192 axial slices, matrix size = 256 × 192). The fMRI data for this experiment were acquired in the axial plane using gradient-echo EPI (TR = 2000 m, TE = 30 m, flip angle = 70 deg, 30 slices, slice thickness = 3.1 mm, 3 mm × 3 mm in-plane, matrix size = 64 × 64) (Soloff et al., 2015 (link)).
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9

3T fMRI Brain Imaging Protocol for Cognitive Tasks

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MRI data was collected using a 3.0-T whole-body scanner (Trio-System), equipped for echo planar imaging (Siemens Medical Systems, Iselin NJ) with a 32 channel, 3-axis gradient head coil. Foam cushions were used to restrict head movements. Task images were displayed using a rear projection system and E-Prime stimulus presentation software (Psychology Software Tools; http://www.psychologysoftware-tools.mybigcommerce.com). Following automated scout and shimming procedures, two high-resolution 3D MPRAGE sequences (TR=2530ms, TE=3.39ms, flip angle=7o, voxel size = 1.3×1.0×1.3 mm) were collected for positioning of subsequent scans. fMRI images were acquired using T2* -weighted sequence (27 axial slices aligned perpendicular to the plane intersecting the anterior and posterior commissures, 5 mm thickness, skip 1 mm, TE=30ms, TR=1600ms, flip angle = 90o).
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10

MRI Imaging of Aphasia Patients

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MRI data were acquired with a 3T Siemens Trio system fitted with a 12-channel head-coil. All participants with aphasia were scanned with two MRI sequences: (i) T1-weighted imaging sequence using a 3D MP-RAGE (magnetization-prepared rapid-gradient echo) [TFE (turbo field echo)] sequence with voxel size = 1 mm3, FOV (field of view) = 256 × 256 mm, 192 sagittal slices, 9° flip angle, TR (repetition time) = 2,250 ms, TI (inversion time) = 925 ms, TE (echo time) = 4.15 ms, GRAPPA (generalized autocalibrating partial parallel acquisition) = 2, and 80 reference lines; and (ii) T2-weighted MRI for the purpose of lesion demarcation with a 3D sampling perfection with application optimized contrasts by using different flip angle evolutions protocol with the following parameters: voxel size = 1 mm3, FOV = 256 × 256 mm, 160 sagittal slices, variable flip angle, TR = 3,200 ms, TE = 352 ms, and no slice acceleration. The same slice center and angulation were used as in the T1 sequence.
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