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Nitrocellulose

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Nitrocellulose is a type of membrane material used in various laboratory applications. It is a porous, cellulose-based substrate that is commonly used for the immobilization and detection of proteins, nucleic acids, and other biomolecules in techniques such as Western blotting, dot blotting, and Southern blotting.

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45 protocols using nitrocellulose

1

Western Blot Quantification Protocol

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SDS-PAGE was carried out using CriterionTM Cell system using pre-casted 4–20% or 4–15% CriterionTM Tris-HCl gels (BioRad; Hercules, CA). Gels were run using the PowerPac basic power supply (BioRad) and were transferred to nitrocellulose (Fisher Scientific; Waltham, MA). nitrocellulose membranes were blocked with 5% dry non-fat milk in Tris-buffered saline (TBS) with 0.01% Tween-20 (TBS-T) for 1 hour at room temperature. Membranes were incubated with primary antibodies overnight at 4°C. Next day membranes were washed 3X in TBS-T, incubated for 1 hour at room temperature with secondary antibodies, and further washed 3X in TBS-T. ECL Plus Western blotting reagent (Pierce Biotechnology; Rockford, IL) was used to detect antibodies. Where indicated, bands were quantified using ImageJ software (28 (link)).
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2

Western Blot Analysis of Recombinant Proteins

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Purified recombinant proteins were analysed in a 10% SDS PAGE gel and by Western blot. Proteins were transferred to nitrocellulose (Bio‐Rad, Hercules, CA) or PVDF (Amersham Hybond, Germany) blotting membranes overnight and the membrane blocked for 1 h using 5% dry milk in phosphate buffer saline +1% Tween 20 (PBST) buffer for nitrocellulose and 5% bovine serum albumin (Fisher). The membrane was then incubated for 1 h using anti‐mCherry for mCherry fusions or anti‐His6 antibodies for Hv1a/Hv1am fusions (1:5000: Invitrogen, Rockford, IL, USA) followed by incubation with secondary goat anti‐rabbit antibody for mCherry (1:5000; Invitrogen, Rockford, IL, USA) and horse radish peroxidase (HRP)‐linked anti‐mouse for anti‐His6 antibodies for 1 h. The resulting reactive protein bands were visualized using a ChemiDocTM MP Imaging System (Bio‐Rad, Hercules, CA, USA).
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3

Protein Quantification and Western Blot Analysis

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A small piece (~100 mg) of left ventricular tissue from each pig heart was isolated. Whole cell lysate was generated using the protocol we reported before (6 (link)). Protein concentration was measured with a BCA kit (Thermo Fisher Scientific, cat# 89900). Samples were solubilized in sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis (PAGE) loading buffer for 5 min at 95°C and resolved on 10% SDS–PAGE gels. After the electro-transferred from the gel to nitrocellulose (Amersham) membrane, the equal loading was confirmed by Ponceau S staining (Fisher Scientific, Cat# AAJ6074430). Immunoblotting was performed using antibodies recognizing LDHA (Thermo Fisher Scientific, Cat# PA5-27406), LDHB (Thermo Fisher Scientific, Cat# 14824-1-AP). Signal was visualized by Odyssey CLx Infrared Imaging System (LI-COR Biosciences). Western signal was digitized and quantitated using Image Studio Lite Quantification Software.
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4

Dig-Functionalized DNA Control Experiments

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For control experiments, we used a dig-functionalized DNA construct. The dig handle was constructed in the same matter as the DBCO handle described above, but instead dig-11-dUTP was used (Digoxygenin-11-dUTP, Roche). Coverslips were cleaned in acetone for 30 min in a sonicator for creating the flow cells. After air-drying, they were coated with 1 % nitrocellulose (Invitrogen) in amylacetate (Sigma Aldrich). Application of reference beads and assembly of flow cells proceeded as described above. Next, nitrocellulose-coated flow cells were incubated with 100 mM anti-dig antibodies (Fab-fragment, Roche) for 30 min. After washing as described above, the surface was passivated with 10 mg/ml BSA (Bioke) for 1 h. Preparation of beads proceeded as described above. Beads with digoxygenin-functionalized DNA then incubated in the flow cell for 10 min. Finally, the flow cell was washed with washing buffer until no more unbound beads were visible.
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5

Protein Isolation and Western Blot

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Protein samples were isolated using the RIPA lysis buffer and quantified followed by electrophoresis on 10% NuPAGE Novex Bis-Tris Mini Gels and blotting onto Nitrocellulose membranes using Mini iBlot Gel Transfer Stacks Nitrocellulose (Invitrogen) Proteins were detected using human SOX7 antibody (R&D) and β-actin (Sigma).
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6

Western Blot Immunodetection Assay

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Cells were washed twice with cold PBS and lysed in RIPA buffer containing Halt protease and phosphatase inhibitor single-use cocktail (Pierce). Lysates were quantified using Bradford assay (Bio-Rad), resolved by SDS gel electrophoresis (Invitrogen), transferred to nitrocellulose (Invitrogen) or PVDF (Millipore) membranes, and then blocked with 5% milk and probed with primary antibodies for EIF1AX (Pierce 1:1,000) and Vinculin (Calbiochem 1:5,000). HRP-linked secondary antibodies (anti-rabbit, anti-mouse IgG; 1:2,000 dilution, Santa Cruz) followed by chemiluminescence (Pierce) were used for detection.
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7

Quantification of Phosphorylated Smad Proteins

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Total cell protein was recovered using M-PER containing Halt Protease and Halt Phosphatase Inhibitor Cocktails and quantified using Pierce BCA Protein Assay Kit (Thermo Fisher Scientific, Wilmington, DE, http://www.fishersci.com/). Proteins were electro-phoresed through 10% SDS-polyacrylamide gels and transferred to nitrocellulose (Invitrogen). Membranes were blocked in 5% milk and incubated with primary antibodies against: phosphorylated Smad1/5/8 (1:750) and β-actin (1:3,000) (Cell Signaling Technology, Danvers, MA, http://www.cellsignal.com/), at 4°C overnight. Bound antibodies were detected with anti-rabbit horseradish peroxidase-conjugated secondary antibody (1:6,000) (Cell Signaling Technology) at room temperature, 1 hour. Detected proteins were imaged with Immobilon Chemiluminescent HRP Substrate (Millipore, Billerica, MA, http://www.millipore.com) and quantified using ImageJ Software.
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8

SDS-PAGE Protein Separation and Western Blotting

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Protein extracts 20 μg were separated on a 7.5% SDS-PAGE gel and transferred to nitrocellulose (Invitrogen) as described [49 (link)]. Same protein lysates were probed on different blots. All antibodies used are shown in Supplementary Table 3. Band signals were visualized with LICOR system.
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9

BMP4 Signaling in C2C12 Cells

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C2C12 cells were plated into 6-well plates (2.5×105 cells/well) and cultured overnight at 37°C. Cells were transfected with V5- or HA-tagged ACVR1 constructs as described above. For stimulation with BMP4, cells were serum-starved (0.5% FBS in DMEM) for 2 hours followed by treatment with 30ng/ml BMP4 (R&D Systems) for 1 hour. Cells were lysed in RIPA buffer (Sigma-Aldrich) supplemented with Halt Protease and Halt Phosphatase Inhibitor Cocktail (Pierce), and cleared by centrifugation. Protein concentrations of lysates were quantified by BCA Protein Kit (Thermo Scientific). Proteins were electrophoresed through 10% Tris-Glycine gels (Invitrogen), and transferred to nitrocellulose (Invitrogen). Membranes were blocked in 5% milk in 1xTBS (BioRad; #1706435) and incubated overnight at 4°C with primary antibodies against phospho-Smad1/5/8 (Cell Signaling Technology, #9511), V5 (Invitrogen R960-25), HA (Sigma Aldrich, #H6908) or β-actin (Cell Signaling Technology, #4967) followed by detection using an anti-rabbit (Cell Signaling Technology, #7074) or anti-mouse (Santa Cruz, #H2208) HRP-conjugated secondary antibody. Membranes were incubated with HRP substrate (LI-COR) and chemiluminescence was detected and quantified with a C-DiGit Blot Scanner (LI-COR).
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10

CD4+ T Cell Signaling Assay

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Naive WT CD4+ cells were stimulated with plate-bound anti-CD3ε and anti-CD28 (10 μg/ml each) in the presence of anti-mouse IL-2 for 72 hours and then recultured with human IL-2 for 24 hours (100 U/ml), rested for 12 hours, and stimulated with either anti-CD3ε and anti-CD28 or IL-2 for the indicated tie points. Cells (107) were then lysed in buffer containing 50 mM Hepes (pH 7.4), 150 mM NaCl, 20 mM NaF, 4 mM EDTA, 50 μM sodium orthovanadate, small peptide inhibitors, 0.5 mM phenylmethylsulfonyl fluoride, and 0.5% (v/v) Triton X-100 (Roche, CH). Protein was precipitated with cold acetone, resuspended in 2× Laemmli reducing sample buffer, separated on a 4 to 12% SDS–polyacrylamide gel electrophoresis gel, and Western blotted onto nitrocellulose (Invitrogen or Bio-Rad, USA). Proteins were identified using anti–p-STAT5 (clone A-9, Santa-Cruz Biotechnologies, USA), p-Thr308 PKB/Akt (catalog 9275, Cell Signaling Technologies, USA), p-Thr24–Foxo1 (catalog 2599, Cell Signaling Technologies), or β-actin (catalog 3700T, Cell Signaling Technologies).
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