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34 protocols using e cad

1

Multiomics Evaluation of Anticancer Agents

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UNBS5162, amonafide, and 5FU were purchased from the American MedChemExpress, Monmouth Junction, NJ, USA. Further, reference antibodies Bcl-2 (proteintech, Rosemont, IL, USA; Cat# 12789–1-AP), active-Caspase3 (Abcam, Cam-bridge, UK; Cat# ab32042), Bax (proteintech, Cat# 50599–2-Ig), P70/S6K (Abcam, Cat# ab109393), AKT (Abcam, Cat# ab8805), p-AKT (Abcam, Cat# ab38449), mTOR (Abcam, Cat# ab32028), p-mTOR (Abcam, Cat# ab109268), Cyclin D1 (proteintech, Cat# 12363–1-AP), E-cad (Abcam, Cat# ab40772), Snail (proteintech, Cat# 13099–1-AP), N-cad (Abcam, Cat# ab6528), Twist (proteintech, Cat# 11752–1-AP), Slug (proteintech, Cat#) and GAPDH (proteintech, Cat# 60004–1-Ig) were used in this study. Our electrochemiluminescence kit was obtained from proteintech.
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2

Protein Expression Analysis in Treated Cells

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After drug administration, the cells were incubated with radioimmunoprecipitation assay lysis buffer on ice for 30 min. The lysate was centrifuged at 12,000 r/min and 4°C for 30 min and the resulting supernatant was collected. The protein concentration was measured using a bicinchoninic acid protein assay kit (Beyotime Biotechnology, China). Equal amounts of total proteins (30 μg) were mixed with an equal volume of loading buffer and loaded onto 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis.
The proteins were then transferred onto polyvinylidene fluoride membranes separately. After blocking with 5% powder skim milk for 1 h, the membranes were incubated with primary antibodies against E-cadherin (E-cad), α-smooth muscle actin (α-SMA), fibronectin (FN), and β-catenin (Abcam, Cambridge, MA, USA) overnight at 4°C, followed by incubation with anti-mouse or anti-rabbit horseradish peroxidase-conjugated antibodies (Abcam) at room temperature for 1 h. Protein expression was visualized using a chemiluminescence system (Olympus, Tokyo, Japan).
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3

Western Blot Analysis of Cellular Signaling Proteins

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Cells were placed on ice and washed with pre-cold PBS for three times. Lyse the cells with RIPA buffer and discard the cellular debris by high-speed centrifugation. Take 20 μg cell lysate and an equal volume of 2× loading buffer, boil the cell lysate at 95 °C for 5 min. After 10-min centrifugation, 20 μg protein were loaded on 10% SDS-PAGE. Then, transfer the protein to PVDF membrane (MilliporeSigma, USA). After 1 h blocking with 5% defat milk, PVDF membrane was incubated with primary antibodies of mTOR, SYK, E-Cad, Vimentin, Collagen I, α-SMA, and VEGFA (Abcam) prepared with 1× TBST. And incubate in the refrigerator overnight. Next, the PVDF membrane was incubated with HRP-conjugated secondary antibodies (Abcam) after three times washing with 1× TBST. Finally, the membrane was treated with ECL solution and imaged under microscopies. All the primary antibodies were purchased from Cell Signaling Technology and diluted at the ratio of 1:1000.
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4

Western Blot Analysis of EMT Markers

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Total proteins were isolated from EC109 and KYSE70 cells using lysis buffer (Beyotime Biotechnology, Shanghai, China). Western blot assay was carried out as described elsewhere.21 The primary antibodies (1:1000) against E‐cadherin (E‐cad), Vimentin (Vim), hypoxia inducible factor‐1 (HIF‐1α), and β‐actin, as well as relative secondary antibodies (1:2000) were provided by Abcam (Cambridge, MA, USA).
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5

Epithelial-Mesenchymal Transition Markers

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Cell lysates were collected from 21PT cells cultured in 2D and 3D. Western blot was performed with indicated antibodies E-cad, (ab76055), Twist (ab50581), β-actin (ab 8227) from abcam, vimentin (clone SP20, RM-9120-S0) was from Thermo Scientific; Snail (LS- C176686) from LS Bio.
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6

Histological Evaluation of Distal Colon

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Distal colon was fixed with 4% paraformaldehyde and embedded in Paraffin. Tissue sections (5 μm) were prepared, deparaffinized, and stained with hematoxylin and eosin. Histological scores were assigned by experimenters “blinded” to sample identity. Colonic epithelial damage was scored according to previous publication.68 (link) For PAS staining, tissue was stored in Carnoy's solution. After dewaxing, sections were stained with PAS dye solution B for 10-15 min, PAS dye solution A for 25-30 min in the dark and PAS dye solution C for 30s. Primary antibodies used for immunofluorescence staining were MUC2 (Abcam) and ECAD (Abcam). All images were acquired with Leica microscope.
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7

Western Blot Analysis of EMT Markers

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After the determination of protein concentration of the cell lysates, each sample with equal amount of protein was subjected to SDS–PAGE (10% or 15%) and transferred to a PVDF membrane (Millipore, Burlington, MA). The membrane was incubated with the specific primary antibody overnight at 4°C, followed by incubation with HRP-conjugated anti-rabbit IgG (1:2000, Cell Signaling Technology, Boston, MA, cat# 7074S) or anti-mouse IgG (1:2000, Cell Signaling Technology, cat# 7076S). The signals were visualized with ECL solution (Millipore). The primary antibodies were as follows: E-cad (1:1000, Abcam, Cambridge, UK, cat# ab76055), N-cad (1:500, Abcam, cat# ab18203), α-SMA (1:500, Abcam, cat# ab5694), FN (1:500, Abcam, cat# ab2413), and ΔNp63α (1:500, Millipore, cat# ABS552). The antibody for GAPDH (1:10,000, ABclonal, MA, cat# AC035) was used as a control.
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8

Immunohistochemical Analysis of Cell Markers

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For IHC staining, after dewaxing, rehydration, and antigen retrieval, the sections were incubated with primary antibodies against CD44, Twist, ZEB1 and E-cad (1:100) (Abcam, Burlingame, CA, USA) at 4 °C overnight, then incubated for 2 h at 37 °C with secondary antibodies. Subsequently, HRP-labeled streptavidin solution was added to the slices for 15 min, then slides were stained by DAB and counterstained with hematoxylin. Finally, observation was performed under a microscope (Leica, Wetzlar, Germany).
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9

Comprehensive Antibody Characterization for EMT, Cell Cycle, and DNA Repair

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Antibodies for EMT, cell cycle, and DNA damage repair pathway were purchased as follows: ZEB-1 (CST:3396), N-CAD (CST:13116), E-CAD (CST:3195), Slug (CST:9585), Snail (CST:3879), Vimentin (CST:5741), β-catenin (CST:8480), CCND1 (CST:92G2), p21 (CST:2947 s), CDK4 (Abcam: Ab108357), CDK6 (Abcam:Ab124821), total ATM (CST:2873), phospho-ATM (Ser1981) (Abcam:5883), phospho-Chk2 (Thr68) (CST:2197), phospho-H2AX (Ser139) (CST:9718), RAD51 (Abcam:ab133534), and β-actin (CST:3700). All the western blot primary antibodies were 1:1000 diluted except RAD51 (1:10000 diluted). The antibody of HMGA2 (Proteintech, 20795-1-AP) was used in Immunohistochemistry (IHC).
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10

Immunohistochemical Analysis of CPA4 and E-cad

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IHC was conducted according to the previous study.14 (link) In detail, the fixed PC tissues were made into a paraffin block and 4-µm sections that were deparaffinized and dehydrated first. The slices were next covered with peroxyacetic acid, sent to antigen retrieval, blocked with 10% BSA, and then incubated with anti-CPA4 (Abcam, Cambridge, UK, dilution: 1:100) and E-cadherin (E-cad, Abcam, dilution: 1:200). Sections were washed with PBS and incubated with the secondary antibody (Streptavidin-HRP), detected with DAB, costained with hematoxylin and finally evaluated by two professional pathologists. Staining intensity was recorded as negative to strong (0–3). Stained positive area was scored as 0–4 (<10%; 10–25%; 26–50%; 51–75%; >76%). Two professional pathologists evaluated the final scores of high CPA4 and positive E-cad expression.
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