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4 protocols using ab6311

1

Protein Expression Analysis via Immunoblotting

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One drop of each sample of soluble protein was placed in a nitrocellulose membrane. After drying, membranes were incubated for 1 h with 5% BSA, with agitation, at room temperature. Subsequently, membranes were incubated with primary antibody:mouse antiCollagen type I 1:1000 (#ab90395, abcam, Cambridge, UK); rabbit antiCollagen type IV, 1:500 (#ab6311, abcam, Cambridge, UK); rabbit antifibronectin 1:500 (#ab45688, abcam, Cambridge, UK); and mouse antilaminin, 1:500 (#L8271, Sigma-Aldrich, St. Louis, MO, USA). After overnight incubation, membranes were washed 3× for 5 min with Tris Buffered Saline (TBS) with Tween 20 and then the R.T.U. VECTASTAIN® Universal ABC Elite® Kit (#PK-7200, Vector Laboratories, Burlingame, CA, USA) was used as a secondary antibody, in accordance with manufacturer’s instructions. Finally, incubation was revealed using a Peroxidase Substrate Kit (DAB) (#SK-4100, Vector Laboratories, Burlingame, CA, USA). Extraction buffer without samples was used as a negative control. Collagen type I (#sc-136157, Santa Cruz Biotechnology, Santa Cruz, CA, USA), Collagen type IV (#C5533, Sigma-Aldrich), fibronectin (#FC010, Sigma-Aldrich, St. Louis, MO, USA) and laminin (#L6274, Sigma-Aldrich, St. Louis, MO, USA) were used as positive controls. At least three independent samples were used in each condition.
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2

Immunolocalization of Extracellular Matrix Proteins

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Immunolocalization of different proteins, such as collagen type I, collagen type IV, fibronectin and laminin, was performed in paraffin-embedded samples sectioned at 5 μm, as previously described for collagen type II [30 (link)]. Briefly, samples were incubated with mouse anticollagen type I 1:100 (#ab90395, abcam, Cambridge, UK); rabbit anticollagen type IV, 1:50 (#ab6311, abcam, Cambridge, UK); rabbit antifibronectin 1:300 (#ab45688, abcam, Cambridge, UK); and mouse antilaminin, 1:300 (#L8271, Sigma-Aldrich, St. Louis, MO, USA), overnight at 4 °C in a humidified atmosphere. As a secondary antibody, the R.T.U. VECTASTAIN® Universal ABC Elite® Kit (#PK-7200, Vector Laboratories, Burlingame, CA, USA) was used, in accordance with manufacturer’s instructions. Incubation was revealed using a Peroxidase Substrate Kit (DAB) (#SK-4100, Vector Laboratories, Burlingame, CA, USA). Samples were counterstained with hematoxylin and mounted in an aqueous mounting medium. Slides were observed in an optical microscope with a coupled camera (DM750, Leica, Wetzlar, DE, Germany). At least three independent samples were used in each condition.
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3

Immunofluorescence of Renal Biopsies

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Immunofluorescence was performed on paraffin-embedded (FFPE) renal biopsies during renal flare (N = 3 for each subgroup) following the protocol described by Mason et al. [40 (link)]. Staining was performed with 1:50 rabbit anti-SP1 (Abcam, ab124804), 1:100 mouse anti-COL1A1 (Abcam, ab6308), or 1:100 mouse anti-COL4A1 (Abcam, ab6311) overnight at 4 °C (more details in SI).
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4

Atherosclerotic Plaque Histological Analysis

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Plaques were snap frozen in liquid nitrogen and a one mm fragment from the most stenotic part was taken for histology. The fragments were embedded in O.C.T. compound (Tissue-Tek, Sakura), cryo-sectioned in serial 8-μm sections, and mounted on coated slides (Superfrost plus). Transversal histological sections were stained with oil red O (for lipids) and with antibodies recognizing CD68 (macrophages), mouse monoclonal anti-human collagen type IV (abcam ab6311), IgY recognizing MDA-collagen type IV or control IgY from the preimmunized hen.
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