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2 protocols using igm pe cy5

1

Comprehensive Analysis of Immune Cell Subsets in Rag1 Mice

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Total cellularity of thymus, spleen, bone marrow and the distribution of the various T and B cell subsets were analyzed in 8-12 week-old ΔRag1 mice and Rag1 H836Q mice. Both groups were compared to age-matched wild type (wt) and Rag1 −/− mice (Jackson Laboratory) [19 (link)]. Splenocytes were stained with a T cell panel consisting of CD4-PB (Ebioscience), CD8-PE/Cy5 (BD), CD3 PE-Cy7 (Biolegend) and a B cell panel consisting of B220-APC (Biolegend), IgM-PE-cy5 (Ebioscience), CD43-PE (Ebioscience). Bone marrow cells were stained with B220-APC (Biolegend), IgM-PE-cy5 (Ebioscience), and CD43-PE (Ebioscience) antibodies. Thymocytes were stained with CD3-PE-Cy7 (Biolegend), CD4-PB (Ebioscience), CD8-PE-Cy5 (BD), CD44-FITC (BD), and CD25-PE (Ebioscience) antibodies, upon excluding B220 (Biolegend), Ter119 (Biolegend) and MAC1 (Biolegend) positive cells. FACS gating strategies are shown in Supplementary Figures S1 to S4 (S1-S4). Standard FSC/SSC live gates and FSC/SSC lymphocyte gates were used.
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2

Comprehensive Hematopoietic Profiling in Mice

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Peripheral blood from each mouse was subjected to complete blood count. Tibias, femurs, iliac crests, spines, ulnae, radii, and humeri were harvested for bone marrow cells. Spleen and thymus were collected for lymphocyte staining. Flow cytometry staining for all hematopoietic subpopulations including T cell developmental stages was performed as previously described (Yu et al., 2015a (link)). For B cell development, the following scheme was used: B220-Pacific Blue (BD Biosciences 558108), IgM-PE-Cy5 (eBiosciences 15-5790-82), CD43-fluorescein isothiocyanate (FITC) (eBiosciences 11-0431-82), CD24-APC (Biolegend 101814), and BP1-PE (eBiosciences 12-5891-83). Definitions of stages of B cell maturation were as follows: A′ pre-pro-B (IgMB220+CD43+BP1CD24), B′ pro-B (IgMB220+CD43+BP1CD24+), C′ pro-B (IgMB220+CD43+BP1+CD24lo), C″ pro-B (IgMB220+CD43+BP1+CD24hi), pro-B (IgMB220+CD43+), pre-B (IgMB220+CD43), B progenitors (IgMB220+), immature B (IgM+B220lo), and mature B (IgM+B220hi). For cell-cycle analysis, bromodeoxyuridine-FITC and 7AAD, or Ki67-FITC and DAPI staining were coupled with staining of specific populations to reveal their cell-cycle status.
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