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4 protocols using iscove modified dulbecco media (imdm)

1

Culturing AML and MDS-L Cell Lines

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AML cell lines HL-60 (ACC-3), and MonoMac-1 (ACC-252) were obtained from DSMZ. MDS-L34 (link),35 (link) was kindly provided by Dr. Starczynowski (Cincinnati Children’s Hospital Medical Centre, OH, USA). AML cell lines were cultured in RPMI medium (Biowest) supplemented with fetal bovine serum (FBS, Lonza), 2 mM L-Glutamine (Lonza) and/or 0.1 mM non-essential amino acids (Lonza) according to manufacturers’ recommendations. Primary MDS and CMML blasts were cultured in IMDM (Biowest) supplemented with 3% heat-inactivated FBS, 2 mM L-Glutamine, 20% BIT 9500 Serum Substitute (StemCell Technologies), 5 ng/ml IL3 (Peprotech), 1 mM sodium pyruvate and 5 × 10−5 M β-mercaptoethanol (Sigma-Aldrich,) and 0.1 mM non-essential amino acids (Lonza).
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2

Cytotoxicity Screening of Cell Lines

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Human A549 cells (RRID:CVCL_0023; Cat#ATCC CCL-185; established from lung carcinomatous tissue from a 58-year-old Caucasian male), MCF-7 (RRID:CVCL_0031; Cat#ATCC HTB-22; established from breast adenocarcinoma from a 69-year-old Caucasian female), and RKO (RRID:CVCL_0504; Cat#ATCC CRL-2577; colon carcinoma cell line) (all obtained from ATCC, USA), were grown in DMEM medium (Fisher Scientific; Cat#11625200) supplemented with 10% FBS (Fisher Scientific; Cat#11560636), 2 mM l-glutamine (Fisher Scientific; Cat#BE17-605E) and 100 units per mL of penicillin/streptomycin (Thermo Fisher; Cat#15140122) and incubated at 37 °C in 5% CO2. HFF-1 cells (RRID:CVCL_3285; Cat#ATCC SCRC-1041) were cultured under the exact same conditions in IMDM (Biowest). Cells were routinely tested for mycoplasma by MycoAlert Mycoplasma Detection Kit (#Cat: 11650261, Thermo Fisher Scientific). No authentication was performed, since passage number 2 cells were thawed and used from the ATCC source in all the experiments. In LC50 determination, cells were seeded at a density of 4000 per well in 96-well plates and after a day of growth, treated with the molecules for 48 h. Thereafter cell viability was measured using CellTiter-Blue® Cell Viability Assay (Promega; Cat#G8081) according to the manufacturer protocol.
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3

Cell Culture Conditions for Cancer Cell Lines

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BxPC-3 and Capan-1 cell lines were purchased from the ATCC (Manassas, VA, USA). MIA PaCa-2, MCF7, SK-BR-3 and MDA-MB-231 cell lines were in possession of 4Cell Therapies S.A. and were authenticated by Eurofins Genomics (Ebersberg, Germany). Capan-1 cells were cultured in IMDM, 20% FBS and 1× pen/strep (Biowest) on collagen I (Merck, Darmstadt, Germany)-coated plates. The BxPC-3 cell line was cultured with RPMI 1640 with 10% FBS and 1 × pen/strep (Biowest). The SK-BR-3 cell line was cultured in McCoy’s 5a supplemented with 20% FBS and 1 × pen/strep (Biowest). All other cell lines were cultured in DMEM high glucose supplemented with 10% FBS and 1 × pen/strep (Biowest).
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4

Cultivation of HEK293T and HAP1 cells

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HEK293T cells were cultivated in DMEM medium (Gibco) supplemented with 10% heat-inactivated fetal bovine serum (Biowest) and 20 μg/ml gentamicin. HAP1 cells were cultivated in IMDM medium supplemented with 10% heat-inactivated fetal bovine serum (Biowest) and 20 μg/ml gentamicin. Cells were grown in humidified incubators at 37°C and 5% CO2. For complementation experiments, IMDM (Gibco) was further supplemented with 5 g/L D-galactose dissolved in PBS and filtered using a 0.22 μm filter. Cells are periodically tested for mycoplasma infections in the lab, and the cells used for this study were mycoplasma-free.
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