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7 protocols using tryptophan 15n2

1

Metabolomic Analysis of Plant Hormones

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High-performance liquid chromatography (HPLC)-grade acetonitrile, methanol, and water were procured from Burdick & Jackson (Morristown, NJ). Mass spectrometry-grade formic acid was purchased from Sigma-Aldrich (St Louis, MO). Calibration solution containing multiple calibrants in a solution of acetonitrile, trifluroacetic acid, and water was purchased from Agilent Technologies (Santa Clara, CA). Metabolites and internal standards, including N-acetyl Aspartic acid-2H3, Tryptophan-15N2, Sarcosine-2H3, Glutamic acid-2H5, Thymine-2H4, Gibberellic acid, Trans-Zeatine, Jasmonic acid, Anthranilic acid 15N, and Testosterone-2H3, were purchased from Sigma-Aldrich (St. Louis, MO).
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Comprehensive Metabolite Analysis by HPLC-MS

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High-performance liquid chromatography (HPLC)-grade ammonium acetate from Sigma, acetonitrile, methanol, chloroform, and water were procured from Burdick & Jackson (Morristown, NJ). Mass spectrometry-grade formic acid was purchased from Sigma-Aldrich (St Louis, MO).) Metabolite standards and internal standards, including N-acetyl Aspartic acid-d3, tryptophan-15N2, sarcosine-d3, glutamic acid-d5, thymine-d4, gibberellic acid, trans-zeatin, jasmonic acid, 15N anthranilic acid, and Testosterone-d3, were purchased from Sigma-Aldrich (St. Louis, MO).
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3

Metabolite Extraction and Quantification

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HPLC grade ammonium acetate, acetonitrile, methanol, chloroform, ethanol, hexane, and water were procured from Burdick & Jackson (Morristown, NJ). MS grade formic acid, standard compounds and isotope labeled standards, including N-acetyl aspartic acid-d3, tryptophan-15N2, sarcosine-d3, glutamic acid-d5, thymine-d4, gibberellic acid, trans-zeatin, jasmonic acid, 15N anthranilic acid, and testosterone-d3, were purchased from Sigma-Aldrich (St. Louis, MO).
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4

Comprehensive Metabolomics Analytical Protocol

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Sources for reagents were: HPLC-grade acetonitrile and water (Burdick & Jackson); mass spectrometry-grade formic acid and ammonium acetate (Sigma-Aldrich); calibration solution containing multiple calibrants in a solution of acetonitrile, trifluroacetic acid, and water (Agilent Technologies); metabolite standards and internal standards, including N-acetyl Aspartic acid-d3, Tryptophan-15N2, Sarcosine-d3, Glutamic acid-d5, Thymine-d4, Gibberellic acid, Trans-Zeatine, Jasmonic acid, 15N Anthranilic acid, and Testosterone-d3 (Sigma-Aldrich).
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5

HPLC-MS Metabolite Quantification Protocol

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High-performance liquid chromatography (HPLC) grade acetonitrile, methanol and water were purchased from Burdick & Jackson (Morristown, NJ). Mass spectrometry grade formic acid and internal standards namely, Tryptophan-15N2, Glutamic acid-d5, Thymine-d4, Gibberellic acid, Trans-Zeatin, Jasmonic acid, Anthranilic acid, and Testosterone-d3 were purchased from Sigma- Aldrich (St.Louis, MO). The calibration solution containing multiple calibrants in acetonitrile/trifluroacetic acid /water was purchased from Agilent Technologies (Santa Clara, CA).
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6

Targeted Metabolomic Analysis of Plasma Samples

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Plasma samples were obtained at baseline (n = 325), stored at −80°C and analyzed at 15–18 years post-enrollment depending on the enrollment date. We quantified free plasma levels of downstream metabolites of the KP, tryptophan, kynurenine, 3-hydroxykynurenine, kynurenic acid, anthranilic acid, 3-hydroxyanthranilic acid and quinolinic acid, in addition to indole metabolites indoxyl sulfate and indole-3-acetate (Fig. 1), using a targeted liquid chromatography-mass spectrometry (LC-MS) platform. Tryptophan 15N2, kynurenic acid D5, anthranilic acid 13C6, indoxyl sulfate 13C6, indoxyl acetate D5 and all authentic standards were purchased from Sigma Aldrich (St. Louis, MO, USA). A total of 50 µL of plasma was extracted with 200 µL of chilled acetonitrile spiked with internal standards, vortexed and centrifuged. The supernatant was transferred to glass vials that were vacufuged. The dried samples were reconstituted in 50 µL of water with 0.1% formic acid. The samples were then analyzed with a 6490 QQQ mass spectrometer with a 1290 Liquid Chromatography machine attached (Agilent, Santa Clara, CA, USA) [14 (link)].
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7

Comprehensive Metabolite Profiling Approach

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High-performance liquid chromatography (HPLC)-grade ammonium acetate, acetonitrile, methanol, chloroform and water were procured from Burdick & Jackson (Morristown, NJ). MS grade formic acid, standards and internal standards, N-acetyl aspartic acid-d3, tryptophan-15N2, sarcosine-d3, glutamic acid-d5, thymine-d4, gibberellic acid, trans-zeatin, jasmonic acid, anthranilic acid-15N, and testosterone-d3, were purchased from Sigma-Aldrich (St. Louis, MO). Mixture of LPC 17:0/0:0, PG 17:0/17:0, PE 17:0/17:0, PC 17:0/17:0, TAG 17:0/17:0/17:0, SM 18:1/17:0, MAG 17:0, DAG 16:0/18:1, CE 17:0, ceramide 18:1/17:0, PA 17:0, PI 17:0/20:4, and PS 17:0/17:0. were obtained from Avanti polar lipids (USA) (Supplementary Table S1).
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