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5 protocols using bradford kit

1

Xylem Sap Protein Quantification

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Xylem sap proteins were solubilized as described in detail in [99 (link),100 ]. Protein was quantified in diluted samples (Bradford kit, Sigma-Aldrich, St. Louis, MO, USA) using a microtiter plate spectrophotometer (Asys UVM 340, Biochrom Ltd., Cambridge, UK) and bovine serum albumin (Sigma) as standard.
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2

Characterization of mouse myeloid dendritic cells

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Monoclonal rat anti-mouse CD34 FITC-conjugated antibody, monoclonal rat anti-mouse Sca-1 PE-conjugated antibody, polyclonal rat anti-mouse CD11c PE-conjugated antibody, monoclonal rat anti mouse Qa2 antibody, monoclonal rat anti mouse IDO antibody, polyclonal rat anti mouse β-Actin HRP-conjugated antibody, monoclonal chicken anti rat HRP-conjugated antibody (all from Abcam, Cambridge, MA, USA), Dulbecco’s modification of Eagle medium (DMEM), Roswell Park Memorial Institute (RPMI), fetal bovine serum (FBS), enhanced luminol-based chemiluminescent substrate (ECL), Granulocyte-macrophage colony stimulating factor (GM-CSF), Trizol, RIPPA buffer, Bradford kit, protein inhibitor, polyvinylidene difluoride (PVDF) (all from Sigma, Ronkonkoma, NY, USA), cDNA synthesis kit (TAKARA, Japan), PCR SYBR Green kit (TAKARA, Japan), Nycodenz (Axis shield, Norway), Pan DC Microbead MACS (Miltenyibiotec, Germany).
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3

Metabolic response to H. pylori infection

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Cells seeded in triplicated in 24-well plates were infected with or without H. pylori for 24 hours. After that, the cells were washed and lysed with passive lysis buffer (Promega). The lysates were centrifuged at 12,000 rpm at 4°C for 5min, and supernatants were collected. The protein concentration of the supernatant was measured with Bradford kit (Sigma). The ATP level of supernatant was determined using the ATP determination kit (Invitrogen) according to the instructions in a SpectraMax plate reader (Molecular Devices) and normalized to protein levels. The media were collected and the content of lactate was determined using lactate assay kit (Sigma) and normalized to cell protein levels. As for glucose incorporation, the cells were infected with or without H. pylori for 24 hours in growth medium containing 1 μCi/mL 2-deoxy-D-[3H] glucose (PerkinElmer). Then, the cells were washed and lysed in 0.4 mL 1% Na-dodecyl sulfate. Intracellular [3H] glucose content was determined in 4 mL scintillant using a Beckman scintillation counter and normalized to cell protein level.
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4

Preparation and Characterization of Amyloid-Beta Oligomers

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The preparation of Aβ1− 42 synthetic oligomers was performed according to a previously described protocol [32 (link)]. The supernatant with Aβ1–42 oligomers was assayed for protein content using the Bradford kit (Sigma-Aldrich). The oligomerization of Aβ1–42 was checked by dot blotting using two different antibodies: 6E10 (beta amyloid antibody; #SIG-39320, Covance) and A11 (anti-oligomer antibody; #AHB0052, Invitrogen). 0.1 to 1 μg of each oligomeric preparation were applied on a nitrocellulose membrane and allowed to air dry. The membrane was then washed with TBS for 5 min and blocked with Odyssey Blocking Buffer (Li-Cor, #FE3092750000) for 1 h at room temperature. The membranes were then incubated overnight at 4 °C with 6E10 (1:2000) or the conformation dependent antibody A11 (1:500) in Odyssey Blocking Buffer with 0.1% Tween-20. Following 3 10-min washes, the blot was incubated with secondary antibody (anti-mouse IRDye 800, 1:2500 (Li-Cor) or anti-rabbit Alexa Flour 680, 1:5000 (Invitrogen)) for 1 h at room temperature, washed again and scanned on Odyssey Imaging System (Li-Cor).
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5

Protein Quantification in Extracellular Vesicles

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The concentration of proteins in EVs was determined using a Bradford kit (Sigma-Aldrich) with bovine serum albumin (BSA, Sigma-Aldrich) as a standard. Lysates to be analyzed were prepared using equal amounts of Laemmli buffer lacking bromophenol blue and were further diluted during the assay (1:31) to prevent buffer constituents to be incompatible with the quantification. The assay was carried out according to the instructions of the manufacturer and samples were measured at a wavelength of 545 nm after an incubation time of 40 min at room temperature.
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