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7 protocols using ciclopirox olamine

1

Molecular Mechanisms in Cellular Stress Response

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The following primary antibodies were used: DJ-1 (Santa Cruz Biotechnology), RUNX1 (Santa Cruz Biotechnology), Lamp1 (Santa Cruz Biotechnology), LC3 (MBL International Corporation), p62 (MBL International Corporation), PARP (Cell Signaling Technology), PRKAA/AMPK (Cell Signaling Technology), phosphor-PRKAA/AMPK (Cell Signaling Technology), Beclin1 (Cell Signaling Technology), ATG5 (Cell Signaling Technology), PCNA (abcam), NFIL3 (Santa Cruz Biotechnology), ETS1 (Santa Cruz Biotechnology), FOXA1 (Santa Cruz Biotechnology), C-JUN (Santa Cruz Biotechnology), EGR3 (Santa Cruz Biotechnology), ATF3 (Santa Cruz Biotechnology), MAFF3 (Santa Cruz Biotechnology), BHLHE40 (Santa Cruz Biotechnology), NR4A2 (Santa Cruz Biotechnology). Ciclopirox olamine, Rotenone, APO, NDGA, NAC, Glucose, Oligomycin, 2-DG, CQ, Bafilomycin A1, E64D and PepA were purchased from Sigma.
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2

3D Printed Nail Matrices for Ciclopirox

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Ciclopirox olamine, anhydrous acetic acid, sodium edetate and acetylacetone were supplied by Sigma Aldrich, Dorset, UK. Phosphate buffer saline (PBS) tablets were purchased from Oxoid Limited, Basingstoke, UK. A commercial formulation of Ciclopirox olamine, Mycoster 80 mg/g (Pierre Fabre Dermo-Cosmetique, Paris, France), was purchased from a pharmacy retailer. High performance liquid chromatography (HPLC) grade water and acetonitrile were obtained from Fisher Scientific, Loughborough, UK.
Nail matrices were drawn in silico using the online computer aided design (CAD) program, TinkerCAD (Autodesk, San Rafael, CA, USA). Graphical images of the designs were imported to Preform™ software (version: 2.14.0, Formlabs, Somerville, MA, USA) prior to printing. 3D printing was carried out using two different stereolithography (SLA) machines: Form1+ and Form2 (Formlabs, Somerville, MA, USA). The stereolithography resin used for printing was GPCL04 (Formlabs, Somerville, MA, USA). This is an acrylate-based resin and was selected because it allows preparation of transparent matrices to facilitate visual examination of drug uptake.
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3

Antifungal Activity Evaluation Protocol

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Sertaconazole nitrate (Grupo Ferrer Internacional, S.A.), terbinafine, or ciclopirox olamine (Sigma‐Aldrich; PHB standard quality) were dissolved in dimethyl sulfoxide (Sigma‐Aldrich) at a final concentration of 10 mg/ml to prepare stock solutions. For the determination of antifungal activity, the corresponding test concentrations were prepared by diluting the stock solutions in the Sabouraud glucose medium (Merck). To identify effective concentrations, sertaconazole nitrate was used in the range of 0.001–50 µg/ml, terbinafine concentrations were varied between 0.00005 and 50 µg/ml, and ciclopirox olamine was tested in concentrations ranging from 20 to 100 µg/ml. To investigate the influence of the samples in the infected full skin models, the corresponding test concentrations (Table 1) were prepared by diluting the stock solution in ultrapure water (WFI; Fresenius Kabi).
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4

Modulation of PBMC Responses by Anti-TNF and Small Molecules

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Peripheral blood mononuclear cells [PBMC] were isolated from buffy coats obtained from healthy blood bank donors, using Ficoll density gradient centrifugation. PBMC of two individual donors were cultured in a 1:1 ratio for 48 h. Subsequently, anti-TNF [infliximab] or control IgG [Sigma Aldrich, Zwijndrecht, The Netherlands] was added, to a final concentration of 10 µg/ml. Where appropriate, additional compounds were added at the concentrations indicated. Albendazole [#A4673], mebendazole [#46404], docetaxel [#01885], paclitaxel [#T7402], budesonide [#PHR1178], fenbendazole [#35032], pyrythione zinc [#H6377], ciclopirox olamine [#C0415], pyrimethamine [#46706], quinacrine [#Q3251], mycophenolic acid [#M3536], adapalene [#A7486], amitryptiline [#A8404], duloxetine [#SML0474], triamterene [#T4143], and colchicine [#C9754] were all obtained from Sigma Aldrich. AMPK activator A769662 was obtained from SelleckChem [#S2697, Munich, Germany] and Compound C from Calbiochem [#171260–1, San Diego, CA]. Cultures were incubated for another 4–5 days and analysed by flow cytometry.
For analysis of effects on isolated macrophages, mixed lymphocyte reactions (MLR) were cultured for 48 h. CD14-expressing cells were isolated using magnetic cell sorting [CD14-microbeads, Miltenyi, Bergisch Gladbach, Germany] and cultured for an additional 72 h in the presence of anti-TNF and/or Albendazole.
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5

Cell Culture and Transfection Protocols for Neuronal Cell Lines

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SH-SY5Y and NTERA-2cl.D1 (NT2/D1) cells were obtained from ATCC and cultured in DME (D6046)/F12 1:1 (Sigma-Aldrich, St. Louis, MO, USA) and DME (D0547)/F12 (Sigma-Aldrich) supplemented with 0.21% NaHCO3, respectively. The murine hippocampal cell line HT22 was a kind gift from D. Schubert, Salk Institute, La Jolla, CA, USA and cultured in DME (D0547)/F12 1:1 supplemented with 0.21% NaHCO3. Media for all cells were supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin (Invitrogen, Carlsbad, CA, USA). All cells were cultured in a humidified 5% CO2 atmosphere at 37 °C. Hypoxia culture experiments were performed in an O2-regulatable incubator (Binder GmbH, Tuttlingen, Germany) or in a H135 HEPA hypoxystation (Don Whitley Scientific Limited, West Yorkshire, UK) in a humidified 5% CO2 and 1% O2 atmosphere. Ciclopirox olamine and deferoxamine were obtained from Sigma-Aldrich. Cells were plated in 24-well plates 1 day before transient transfection with plasmid constructs for 24–48 h using Lipofectamine 3000 (Invitrogen) or DNAfectinTM Plus (ABM Inc., Vancouver, Canada). The pRL-TK plasmid (Promega) was used as a transfection control. Luciferase activities were measured using the Dual Luciferase Reporter Assay System (Promega) as described [15 (link)]. Results are representative of two or more experiments, each performed in quadruplicate, and are shown as means + SD.
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6

Hypoxia-Inducing Reagent Preparation

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Cobalt chloride hexahydrate was a product of Sigma Chemical Co. and was used as a 100 mM stock solution in water. Ciclopirox olamine was also purchased from Sigma and was used as a 250 mM stock in methanol. Dimethyloxalylglycine was used as a 100 mM stock solution in water and was obtained from EMD Millipore. All culture medium and associated reagents were a product of Corning Cellgro (Mediatech, Inc). The fetal bovine serum used in the culture medium was a product of HyClone (Thermo Fisher Corp.).
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7

Compound Screening for Chagas Disease

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Compounds were prepared in 100% DMSO, at the following concentrations: benznidazole (supplied by EpiChem Pty Ltd., Perth, Australia): 34.7 mM, nifurtimox (Sigma Aldrich, St. Louis, MO, USA): 34.7 mM, ciclopirox olamine: 40 mM, camptothecin 20 mM, clotrimazole 17.5 mM (all purchased from Sigma Aldrich, USA). Ethyl oxo{[2-(4-phenyl-1-piperazinyl)-2-(3-pyridinyl)ethyl]amino} acetate: 20 mM (E155-0206; Chemdiv, San Diego, CA, USA). MMV688958 and MMV688796 were sourced from Enamine (Kyiv, Ukraine) and prepared at 20 mM in 100% DMSO. Compounds were tested in assays in 14 log dilutions to determine IC50 values, ranging from 73 µM to 3.7 × 10−3 µM for camptothecin, E155-0206, MMV688958 and MMV688796; 64.1 µM to 2.6 µM for clotrimazole; 146 µM to 2.6 µM for ciclopirox olamine and 127 µM to 6.4 × 10−3 µM for nifurtimox and benznidazole, to determine IC50 values.
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