The largest database of trusted experimental protocols

2 protocols using twist2

1

Gene Expression Analysis of EMT and PROM2 in Cancer Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
For all cell lines, total RNA was extracted from 106 viable cells. For tumour xenografts, it was extracted from 20 frozen sections of 5 µm. Total RNA was extracted using RNeasy‐Mini‐Kit (#74104; Qiagen, France) and quantified on NanoDrop (LabTech, France). Human PROM2 gene expression was assessed using the human PROM2 primer Hs00376331_m1 (ThermoFisher). EMT gene expression was assessed using human ZEB1 primers (Hs00232783_m1), ZEB2 (Hs00207691_m1), SNAI1 (Hs00195591_m1), SNAI2 (Hs00950344_m1), TWIST1 (Hs01675818_s1), TWIST2 (Hs02379973_s1), CDH1 (Hs01023894_m1) and VIM (Hs00185584_m1) (ThermoFisher). Human CAV1 gene expression was assessed using the human CAV1 primer Hs00971716_m1 (ThermoFisher). Total RNA was reverse‐transcribed before qPCR amplification using random primers with GoScript™ Reverse Transcriptase (#A5001; Promega, France). The qPCR reactions were performed using fluorescent probes on a CFX96 Real Time System (Bio‐Rad, France). A blank sample (no cDNA) was included and the experiments were performed in triplicate for each gene. The housekeeping genes TBP (Hs00427620_m1) and GAPDH (Hs02758991_g1) were used to normalise gene expression results. Each RT‐qPCR assay was performed according to the MIQE guidelines
24 (link) and conducted in triplicate.
+ Open protocol
+ Expand
2

Western Blot Analysis of EMT Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
All cells were lysed in buffer composed of 50 mm Tris (pH 7.4), 5 mm EDTA, 150 mm NaCl and 0.5% Triton X-100 containing 1 μg/mL leupeptin and aprotinin and 1 mm phenylmethyl sulfonyl fluoride. The protein content of cell lysates was quantified by using the Pierce BCA protein assay kit, and equal amounts of the total protein were dissolved in Laemmli SDS-PAGE sample buffer prior to separation by 15% SDS-PAGE. Proteins were transferred to polyvinylidene difluoride membrane (Bio-Rad), and Western blot analysis was performed by using standard techniques with enhanced chemiluminescence detection (Roche/Boehringer Mannheim, Indianapolis, IN, USA). The following antibodies were used in this experiment: E-cadherin, vimentin, B-catenin, TWIST1, B-actin (Cell Signaling, Cat #-3195T, 5741T, 8480T, 46702, 4967S) and TWIST2 (ThermoFisher 66544-1-IG).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!