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6 protocols using n methylmorpholine

1

Fabrication of EGCG-Gelatin Sponges

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EGCG was purchased from Bio Verde Inc. (Kyoto, Japan). 4-(4,6-Dimethoxy-1,3,5-triazin-2-yl)-4-methyl-morpholinium chloride (DMT-MM) and N-methylmorpholine (NMM) were purchased from Tokyo Chemical Industry Co., Ltd. (Tokyo, Japan) and Nacalai Tesque Inc. (Kyoto, Japan), respectively. Gelatin extracted from porcine skin in acidic conditions (Type A gelatin) was purchased from Sigma-Aldrich (St. Louis, MO, USA). EGCG-GS was prepared by an aqueous synthesis method reported previously [23 (link)]. In brief, gelatin (100 mg) was dissolved in warm Milli-Q water (5 mL) at 50 °C. A solution with NMM (27.5 µL), EGCG (0.07, 0.7 or 6.7 mg), and DMT-MM (69.2 mg) was stirred for 24 h at room temperature in the dark. The products were purified by dialysis (Spectra/Por7 MWCO 1000; Spectrum Labs, Rancho Dominguez, CA, USA) in Milli-Q water in the dark. The same conditions but without EGCG, DMT-MM, and NMM were used to prepare the gelation solution. After dialysis, the resulting solution was diluted to 10 mL with Milli-Q water and was poured in φ5-mm silicon tubes, followed by lyophilization with DC800 (Yamato Co., Ltd., Tokyo, Japan) to produce the EGCG-GSs or GS. To fabricate vhEGCG-GSs and vhGS, EGCG-GSs and GS were treated by vacuum heating using ETTAS AVO-250NS (AS ONE, Osaka, Japan) at 150 °C for 24 h with a gauge pressure of −0.1 MPa. All sponges were stored at 4 °C in the dark until use.
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2

Quantitative Lipid Profiling Protocol

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Formic acid, free cholesterol enzymatic test kit, trimethylamine, pyridine, sodium sulphate, palmitic acid, and palladium/carbon were purchased from FUJIFILM WAKO Chemicals (Osaka, Japan). Acetone, chloroform, ethanol, filipin complex, 1-hydroxytriazole, Ham′s F-12 medium, iodine, pivaloyl chloride, serine, and toluene were purchased from Nacalai tesque (Kyoto, Japan). Acetonitrile, methanol-d4, and chloroform-d were purchased from Kanto Kagaku (Tokyo, Japan). Acetyl chloride, dichloromethane, 1, 3-dicyclohexylcarbodiimide, imidazole, N-methylmorpholine, L-serine benzyl ester hydrochloride, and phosphorus trichloride were purchased from Tokyo chemical industry Co. (Tokyo, Japan). NBD-F was purchased from DONJINDO laboratories (Kumamoto, Japan). Choline tosylate was purchased from Toronto Research Chemicals (North York, ON, Canada). Foetal bovine serum was purchased from Gibco (Grand island, NY, USA). SPC and Lyso-SM (d17:1) were purchased from Avanti polar lipids, Co. Ltd. (Alabaster, AL, USA). Ultrapure water was prepared with PURELAB ultra (Organo Co. Ltd., Tokyo, Japan) and used in all MS analyses.
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3

Targeted Metabolite Profiling by LC/MS

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Optima LC/MS grade acetonitrile and water, anhydrous N,N-dimethylformamide (DMF), and 4-(4,6-dimethoxy-1,3,5-triazin-2-yl)-4-methylmorpholinium tetrafluoroborate (DMTMM) were purchased from Fisher Scientific (Fair Lawn, NJ). N-Methylmorpholine (NMM) was purchased from TCI America (Tokyo, Japan). Twenty-four metabolite standards (glycine, L-alanine, L-cysteine, L-serine, L-proline, L-valine, L-threonine, L-leucine, L-isoleucine, L-aspartic acid, L-asparagine, L-glutamic acid, L-glutamine, L-methionine, L-dopamine, L-lysine, L-histidine, L-phenylalanine, L-arginine, L-tyrosine, L-tryptophan, serotonin, γ-aminobutyric acid, dopamine, kynurenine) and triethylammonium bicarbonate (TEAB) was purchased from Sigma (St. Louis, MO). Formic acid (FA) was purchased from Fluka (Buchs, Switzerland). SCX Ziptips were purchased from Millipore.
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4

Metabolite Quantification by LC-MS

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Optima LC/MS grade acetonitrile, methanol and water, N,N-dimethylformamide (DMF), and 4-(4, 6-dimethoxy-1, 3, 5-triazin-2-yl)-4-methylmorpholinium chloride (DMTMM) were purchased from Fisher Scientific (Fair Lawn, NJ). N-methylmorpholine (NMM) was purchased from TCI America (Tokyo, Japan). 12 Metabolite standards (histidine, valine, tyrosine, leucine, lysine, phenylalanine, tryptophan, alanine, serotonin, dopamine, γ-aminobutyric acid, and norepinephrine), 3-aminoquinoline, and triethylammonium bicarbonate (TEAB) was purchased from Sigma (St. Louis, MO). Formic acid (FA) (≥98%) was obtained from Fluka (Büchs, Switzerland). C18 and OMIX SCX Ziptips were purchased from Millipore and Agilent, respectively. Deionized water (18.2 MΩ·cm) was prepared with a Milli-Q Millipore system (Billerica, MA).
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5

Synthesis and Characterization of PEGylated Gold Nanoparticles

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The following materials were used as received: succinic anhydride (TCI America, Portland, OR), 2,2`-(ethylenedioxy)-diethylamine (Fluka, St Louis, MO), N-methylmorpholine (TCI America, Portland, OR), 2-chloro-4,6-dimethoxy-1,3,5-triazine (Acros Organics, New Jersey, NJ), H2N-PEG2000-NH2 and H2N-PEG2000-OCH3 (Laysan Bio, Arab, AL). Other solvents (HPLC quality) were purchased from Fisher Scientific (Pittsburgh, PA), EMD (Gibbstown, NJ), and VWR International (West Chester, PA). Sodium citrate dihydrate, was from Sigma-Aldrich, HAuCl4 trihydrate was from LabChem Inc, Hydrochloric acid 37% and nitric acid 68% were from BDH chemicals, lipoic acid from Alfa Aesar, thiazolyl blue tetrazolium bromide (MTT) from Affymetrix, hydrazine hydrate from Acros Organics, RIPA lysis buffer and NaOH were purchased from Amresco, doxorubicin hydrochloride from TRC Canada, dithiodipropionic acid from Aldrich.
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6

Isotopic Labeling Mass Spectrometry

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Methanol (MeOH), acetonitrile (ACN), glacial acetic acid, crab saline components (described below) and LC-MS solvents were purchased from Fisher Scientific (Pittsburgh, PA). Isotopic leucines and formaldehyde, triethylammonium bicarbonate (TEAB), N,N-dimethylformamide (DMF), 4-(4,6-dimethoxy- 1,3,5-triazin-2-yl)-4-methylmorpholinium tetrafluoroborate (DMTMM), ammonium formate, and copper (II) chloride were purchased from Sigma Aldrich (St. Louis, MO). N-methylmorpholine (NMM) was purchased from TCI America, (Tokyo, Japan). C18 ZipTips were purchased from Millipore (Burlington, MA). Strong cation exchange (SCX) spin tips were purchased from PolyLC (Columbia, MD).
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