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5975c mass selective detector

Manufactured by Agilent Technologies
Sourced in United States

The 5975C Mass Selective Detector is a laboratory instrument designed for the analysis and identification of chemical compounds. It functions by ionizing and separating molecules based on their mass-to-charge ratio, providing detailed information about the composition of a sample.

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42 protocols using 5975c mass selective detector

1

Volatile Organic Compound Analysis by GC-MS

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The GC-MS analysis was performed using an Agilent Technologies 7890A gas chromatograph coupled with a 5975C Mass-Selective Detector (MSD) equipped with a split/splitless injector (1 µL). The analysis was carried out on an HP-5MS fused silica capillary calibrated column (30 m × 0.25 mm i.d.; film thickness 0.25 µm). The injector and detector temperatures were kept at 250 °C. Helium was used as carrier gas at a flow rate of 1.1 mL/min; oven temperature program was 70 °C/2 min, which was then programmed to 200 °C at the rate of 5 °C/min, and finally to 300 °C at the rate of 20 °C/min. The split ratio was 1:50, the MSD ionization energy was 70 eV, scan time was 1 s, the acquisition mass was in the range from 30 to 450 amu, and the solvent delay was 3 min.
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2

Determination of Endocrine Disruptors and Pharmaceuticals in Wastewater and Sludge

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For the determination of the target compounds, wastewater and sludge samples were analyzed using a chromatographic method developed by Samaras et al. [39 (link)]. The developed procedure included solid phase extraction (SPE) for wastewater samples and sonication, followed by SPE, for sludge samples. After SPE, silylation was performed at 70 °C for 20 min by adding 50 μL of BSTFA + 1% TMCS along with 10 μL of pyridine. BPA-d16 and MCF were used as surrogates for the determination of endocrine disruptors and pharmaceuticals, respectively. For the qualitative and quantitative analyses, an Agilent Gas Chromatograph 7890A connected to an Agilent 5975C Mass Selective Detector (MSD) was used. The separation of the target compounds was achieved using a HP5MS Ultra Inert GC column (30 m) with a film thickness of 0.25 μm and internal diameter of 0.25 mm (Agilent Technologies, CA, USA). Wastewater characteristics were determined using standard methods [40 ].
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3

Quantitative Analysis of PCBs in Sediments

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Sediment samples were dried at 40 °C for 24 h, ground, and sieved at 2 mm. The sieved samples (10–25 g), spiked with internal standards, were extracted by a Soxhlet system for 24 h by 300 mL of n-hexane for PCB analysis. The extracts were concentrated and purified by liquid chromatography on a silica gel column. PCBs were recovered by elution with 30 mL of a diethyl ether/hexane mixture (1:10, v/v). The fractions were concentrated using a rotary evaporator followed by a flow of nitrogen. Internal standards were added before quantification by instrumental analysis [58 ].
The separation, identification, and quantification of PCBs in water and sediments were performed using gas chromatography coupled with mass spectrometry (7890 gas chromatograph (GC) coupled with a 5975C mass selective detector (MSD), Agilent Technologies Inc., Palo Alto, CA, USA). The system is based on a chromatographic separation based on retention time and peak intensity, coupled with compound identification based on molecule ionization, which breaks them into fragments. The mass of the resulting fragments is specific for each molecule and can be used to identify the chemical. The MS was operated in the selected ion-monitoring (SIM) mode. The mass spectra were compared to the reference libraries of known compounds to be identified.
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4

Quantitative Analysis of PCBs in Sediments

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Sediment samples were dried at 40 °C for 24 h, ground, and sieved at 2 mm. The sieved samples (10–25 g), spiked with internal standards, were extracted by a Soxhlet system for 24 h by 300 mL of n-hexane for PCB analysis. The extracts were concentrated and purified by liquid chromatography on a silica gel column. PCBs were recovered by elution with 30 mL of a diethyl ether/hexane mixture (1:10, v/v). The fractions were concentrated using a rotary evaporator followed by a flow of nitrogen. Internal standards were added before quantification by instrumental analysis [58 ].
The separation, identification, and quantification of PCBs in water and sediments were performed using gas chromatography coupled with mass spectrometry (7890 gas chromatograph (GC) coupled with a 5975C mass selective detector (MSD), Agilent Technologies Inc., Palo Alto, CA, USA). The system is based on a chromatographic separation based on retention time and peak intensity, coupled with compound identification based on molecule ionization, which breaks them into fragments. The mass of the resulting fragments is specific for each molecule and can be used to identify the chemical. The MS was operated in the selected ion-monitoring (SIM) mode. The mass spectra were compared to the reference libraries of known compounds to be identified.
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5

Glycosyl Composition Analysis by GC-MS

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Glycosyl composition analysis was performed by combined gas chromatography/mass spectrometry (GC-MS) of the per-O-trimethylsilyl (TMS) derivatives of the monosaccharide methyl glycosides generated by acidic methanolysis (Santander at al., 2013; Edgar et al., 2016) . Briefly, sample aliquots were added into separate tubes containing 20 μg inositol as internal standard. After drying, methyl glycosides were prepared by mild acid treatment by methanolysis in 1 M HCl in methanol at 80 °C for 16 h, followed by re-N-acetylation with pyridine and acetic anhydride in methanol (for detection of amino sugars). Samples were then per-O-trimethylsilylated at 80 °C for 0.5 h using Tri-Sil (Pierce, Rockford, IL), separated on an Agilent DB-1 fused silica capillary column (30 m × 0.25 mm), and analyzed by GC-MS using an Agilent 7890A GC interfaced to an Agilent 5975C mass selective detector (MSD).
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6

Plasma and Tissue Metabolite Analysis

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Blood was obtained prior to and approximately every 30 minutes during infusion until tissue was removed from the patient or mouse. Whole blood was chilled on ice and centrifuged to separate and freeze the plasma. Aliquots of 25-50μl of plasma were added to 80:20 methanol:water for extraction. Frozen tissue fragments weighing 5-15mg were added to 80:20 methanol:water and extracted to analyze 13C enrichment. Samples were subjected to three freeze-thaw cycles, then centrifuged at 16,000xg for 15 minutes to precipitate macromolecules. The supernatants, with 1μl of d27-myristic acid added as an internal control, were evaporated, then re-suspended in 40μL anhydrous pyridine and added to a pre-prepared GC/MS autoinjector vials containing 80μl N-(tert-butyldimethylsilyl)-N-methyltrifluoroacetamide (MTBSTFA) derivatization reagent. The samples were incubated at 70oC for 1 hour following which aliquots of 1μl were injected for analysis. Each sample was injected in triplicate to establish technical reproducibility. Samples were analyzed using either an Agilent 6890 or 7890 gas chromatograph coupled to an Agilent 5973N or 5975C Mass Selective Detector, respectively. The observed distributions of mass isotopologues were corrected for natural abundance.
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7

GC-MS Analysis of Aqueous Mulberry Extract

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GC-MS analysis was performed to determine the molecular composition of AME. The filtered AME was analysed using Agilent 6890 Gas Chromatograph with a 5975C Mass-selective Detector (Agilent, Palo Alto, CA, USA). The column used was ZB-5 MSI (30 m × 0.25 mm × 0.25 μm) and the mobile phase was 5% phenyl/95% dimethylpolysiloxane. Helium was used as the carrier gas at a constant flow rate of 1 mL/min. The initial oven temperature was 40°C and it was maintained at this temperature for 1.5 min; the temperature was gradually increased to 230°C at a rate of 4°C/min and was maintained for 8 min. The temperature of the injection port was 250°C and the flow rate of helium was 1 mL/min. The compounds discharged from the column were detected by a quadrupole mass detector. The ions were generated by electron ionization method. The temperatures of the MS quadrupole and source were 150 and 230°C, respectively, electron energy was 70 eV, temperature of the detector was 230°C, the emission current multiplier voltage was 1624 V, the interface temperature was 280°C, and the mass range was from 20 to 460 u. The relative mass fraction of each chemical component was determined by peak area normalization method. The National Institute Standard and Technology Library was used to analyse the spectrum and identify the compounds detected.
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8

Metabolite Extraction and GC-MS Analysis

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Plasma (25-50μl) and tissue (5-15mg) were added to 80:20 methanol:water for metabolite extraction. Samples underwent freeze-thaw cycles and were centrifuged at 16,000xg for 10 minutes to precipitate macromolecules. The supernatants were evaporated, then re-suspended in 40μL anhydrous pyridine and added to a pre-prepared GC/MS autoinjector vials containing 80μl N-(tert-butyldimethylsilyl)-N-methyltrifluoroacetamide (MTBSTFA) derivatization reagent. The samples were incubated at 70°C for 1 hour. 1μl aliquots were injected for analysis. Samples were analyzed using either an Agilent 6890 or 7890 gas chromatograph coupled to an Agilent 5973N or 5975C Mass Selective Detector, respectively. The observed distributions of mass isotopologues were corrected for natural abundance. Corrected abundances are shown as the percent of pool enriched for labeled metabolite (i.e., glucose m+6).
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9

GC-MS Analysis of Fatty Acid Methyl Esters

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Fatty acid methyl esters (FAMEs) were analyzed by GC/MS on a 7890A gas chromatograph (Agilent Technologies, Inc., Santa Clara, CA, USA) linked to a 5975 C mass selective detector (Agilent Technologies, Inc., Santa Clara, CA, USA) by using the following conditions: inlet temperature 270°C, transfer line temperature of 280°C, and column oven temperature programmed from 35 to 285°C with the initial temperature maintained for 5 min then 10°Cmin−1 to 280°C, held at this temperature for 20.4 min. The GC was fitted with a HP-5 MS low bleed capillary column (30 m × 0.25 mm i.d., 0.25 μm) (J&W, Folsom, CA, USA). Helium at a flow rate of 1.25 ml min−1 served as the carrier gas. The mass selective detector was maintained at ion source temperature of 230°C and a quadrapole temperature of 180°C. Electron impact (EI) mass spectra were obtained at the acceleration energy of 70 eV. A 1.0 μl aliquot of sample was injected in the splitless mode using an auto sampler 7683 (Agilent Technologies, Inc., Beijing, China). Fragment ions were analyzed over 40–550 m/z mass range in the full scan mode. The filament delay time was set at 3.3 min.
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10

GC-MS Analysis of Tumor Metabolites

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For gas chromatography-tandem mass spectrometry (GC-MS), subcutaneous tumor fragments weighing 5–15 mg were homogenized using an electronic tissue disruptor (Qiagen) in ice-cold 80:20 methanol:water (vol:vol) followed by with three freeze-thaw cycles in liquid nitrogen. The supernatant was collected after a 10 min centrifugation at 13,000xg at 4°C then lyophilized. To analyze isotope enrichment in the plasma, whole blood was chilled on ice then centrifuged for 1 minute at 13,000xg at 4°C to separate the plasma. Aliquots of 20–40 μl of plasma were added to 80:20 methanol:water to extract the metabolites, then lyophilized using a SpeedVac (Thermo), and re-suspended in 40 μl anhydrous pyridine. This solution was added to pre-prepared GC-MS autoinjector vials containing 80 μl N-(tert-butyldimethylsilyl)-N-methyltrifluoroacetamide (MTBSTFA) to derivatize polar metabolites. The samples were incubated at 70°C for 1 hour, then aliquots of 1 μl were injected for analysis. Samples were analyzed using either an Agilent 6890 or an Agilent 7890 gas chromatograph coupled to an Agilent 5973N or 5975C Mass Selective Detector, respectively. The observed distributions of mass isotopologues were corrected for natural abundance39 (link).
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