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22 protocols using ab24509

1

Western Blot Analysis of Protein Expression

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Mechanically homogenized tissue samples were boiled for 10 min in gel-loading buffer (125 mM Tris-HCl, 4% sodium dodecyl sulfate [SDS], 10% 2-mercaptoethanol, pH 6.8, 0.2% bromophenol blue). Total protein equivalents for each sample were separated by SDS–polyacrylamide gel electrophoresis and transferred to PVDF membranes. Immunoblotting was performed with antibodies against SMP30 (a kind gift from Tokyo Metropolitan Geriatric Hospital and Institute of Gerontology), UCP1 (SC-6529; Santa Cruz Biotechnology, Dallas, TX, USA), β-actin (SC-47778; Santa Cruz), GAPDH (SC-32233; Santa Cruz), TFIIB (SC-271736; Santa Cruz), PPAR-α (ab24509; Abcam), and FGF21 (AF3057; R&D Systems, Minneapolis, MN, USA or SC 292879). Western blots were visualized by enhanced chemiluminescence (Davinch-Chemi System, CAS400) according to the manufacturer’s instructions. The SMP30 antibody was validated using liver samples from WT and SMP30-KO mice.
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2

Western Blot Analysis of Liver, Heart, and Kidney Proteins

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Protein extracts were prepared from the thawed liver, heart, and kidney tissue samples. Equal amounts of proteins were separated on 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) (TGX™ FastCast™ Acrylamide Kit, 12% NO. 1610175). The tissues were then transferred onto polyvinylidene difluoride (PVDF) membranes (Trans-Blot® Turbo™ Mini PVDF Transfer Packs NO. 1704156; Bio-Rad, USA) and were subsequently blocked with nonfat dry milk (Blotting-Grade Blocker NO. 1706404 for western blot applications). The membranes were incubated with primary antibodies against PPAR-α (ab24509; Abcam, USA), PPAR-γ (ab209350; Abcam, USA), CPT1A (ab83862; Abcam, USA), liver FABP antibody-N-terminal (ab190958; Abcam, USA), and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (ab181602; Abcam, USA). After washing with 0.1% Tween 20 in Tris-buffered saline (TBS), the membranes were incubated with the horseradish peroxidase-conjugated secondary antibody (ab6721; Abcam, USA). The images were detected by the ChemiDoc MP System imager. The bands were quantified and analyzed by JLab software.
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3

Immunofluorescence Analysis of Nuclear Envelope Proteins

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Cells were rinsed with PBS and fixed with 4% PFA in PBS for 10 min at RT, followed by two washes. In Tris‐buffered saline (TBS) for 5 min each. Cells were permeabilized with 0.3% Triton X‐100 in PBS for 20 min at RT, followed by blocking with 3% normal goat serum (NGS) in PBS for 60 min at RT and incubation with primary antibodies (mouse anti‐RAN, 1:500, BD‐610340, BD Biosciences; rabbit anti‐laminB1, 1:1,000, ab16048, Abcam; mouse anti‐NPC, 1:1,000, ab24509, Abcam; rabbit anti‐POM121, 1:1,000, NBP2‐19890, Novus Biologicals) in 3% NGS in PBS overnight at 4°C. After 3 washes with PBS, cells were incubated with fluorescently labeled (Alexa‐labeled antibodies, Invitrogen) secondary antibody diluted 1:1,000 in 3% NGS in PBS for 1–2 h at room temperature. Nuclei were stained with DAPI diluted 1:1,000 in PBS for 10 min. Cells were washed once more with PBS and stored at 4°C in PBS with 0.02% NaN3 until imaging, which was done on a Zeiss confocal microscope (LSM880‐1) using a 60× oil objective. Colocalization of small NE Tau granules with NPC and POM121 was observed.
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4

Immunohistochemical Analysis of Kidney Metabolic Markers

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Paraffin-embedded kidney sections were deparaffinized, hydrated, antigen retrieved, and endogenous peroxidase activity was quenched by 3% vol./vol. H2O2. Sections were then blocked with 10% vol./vol. normal donkey serum, followed by incubation with anti-PPARα (ab24509, Abcam), anti-CPT1α (ab128568, Abcam), anti-HIF-1α (NB100-123, Novus, New York, NY, USA), anti-HK2 (ab76959, Abcam), or anti-phospho-LDH (8176S, Cell Signaling Technology) overnight at 4 °C. After wash, sections were incubation with secondary antibody for 1 h, followed by incubation with avidin–biotin complex reagents for 1 h at room temperature before being subjected to substrate 3-amino-9-ethylcarbazole (Vector Laboratories, Burlingame, CA, USA). The percentage of positive cells to the selected field was analyzed using Image Pro Plus 6.0 software. An average percentage for each section was calculated. At least ten randomly chosen fields under the microscope were evaluated for each sample, and an average score was calculated.
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5

Automated Western Blotting of Nuclear Receptors

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The sample protein was extracted from liver tissues after the cells were lysed by RIPA buffer (89901, Thermo Scientific) at 4°C for 20 minutes and centrifuged for 10 minutes (4°C, 11180.0g). The secondary antibodies were anti‐PPARγ (ab209350, Abcam), anti‐PPARα (ab24509, Abcam), anti‐FXR (NBP2‐16550, Novus), anti‐RARα (ab254098, OriGene) and anti‐PPARδ (ab23673, Abcam). The protein was quantified completely by automatic Western blotting through a Wes automated system (ProteinSimple). The dynamic linear range of the standard protein was diluted in a gradient from 0.125 to 4 mg/mL. The Western blotting process was conducted according to the instructions for the Wes system, which differs from the traditional method. The machine was run with default parameters, and imaging and analysis were performed using Compass software (ProteinSimple).
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6

Comprehensive Protein Expression Analysis

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Total protein samples were isolated from liver tissue and cells cultured using RIPA lysis buffer (Thermo Fisher Scientific, USA) containing protease and phosphatase inhibitors (Roche, Basel, Switzerland). Samples were separated by 10% SDS-polyacrylamide gel electrophoresis and transferred onto polyvinylidene difluoride membranes (Millipore, CA). The membranes were blocked in 5% milk and incubated with primary antibodies against mTOR (2983T), p-mTOR (5536T), p70S6 (9234), S6 (2217), pS6 (2211), TLR2 (13744), pNF-κBp65 (3033), NF-κBp65 (4764), NF-κBp50 (13586) and β-actin (4970) (CST, USA) at 1:1000 in TBST. Antibodies against PPAR-α (ab24509), SREBP-1 (ab28481), FASN (ab22759), ACC1 (ab45174), S6K1 (ab32529) and Caspase-1 (ab1872) were obtained from Abcam (Cambridge, USA). The intensity of the bands was analyzed by scanning densitometry and quantified by NIH Image J software. For protein expression, the specific band intensity was quantified, normalized to those of β-actin, and presented as a value relative to the control.
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7

Comprehensive Glutathione Pathway Analysis

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All chemicals, unless specified, were purchased from Sigma. Antibodies against glutathione [D8] (ab19534), GCLC (ab53179), GCLM [EPR6667] (ab126704), glutathione synthetase [EPR6562] (ab124811), glutathione reductase (ab16801), xCT or Slc7a11 (ab37185), PPARα (ab24509), PPARγ (ab19481), PGC1α (ab54481), Vitamin D receptor (ab3508), and β-actin HRP (ab49900) were purchased from Abcam. The anti-CTH (WH0001491M) and anti-GLUT4 (G4048) were purchased from Sigma Aldrich. Goat anti- mouse HRP (170–6516) was purchased from Biorad and the goat anti-rabbit HRP (12–348) from Millipore. Pierce protein A/G agarose was purchased from Thermo Scientific.
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8

Immunohistochemical Analysis of PPARα in Renal Tumors

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IHC was performed with renal tumor tissue sections, as described previously 22 (link). Briefly, after deparaffinization, hydration and antigen retrieval, the samples were incubated with a primary antibody to PPARα (1:100 dilution; abcam cat# ab24509) overnight at 4°C. After a washing procedure, a broad-spectrum secondary antibody was incubated. The sections were photographed with the Olympus BX53 biomicroscope. All staining was independently assessed by two pathologists.
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9

Adipose Tissue Protein Analysis

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Protein abundance was determined in AT samples (n = 9 per group in S vs. W, and n = 6 per group in CL vs. HS) by immune blotting method. The protein concentrations of AT were measured by Bradford assay (Bio-Rad protein quantification kit). Subsequently, under reducing conditions, SDS-PAGE was used to resolve 20 g of sample in Laemmli loading buffer, which was then transferred to nitrocellulose membrane with the following antibodies: MGLL (1:200, ab24701, Abcam, Cambridge, UK), β-actin (1:1000, ab46805, Abcam Biotech, Cambridge, UK), CB1 (1:200, ab23703, Abcam Biotech, Cambridge, UK), FAAH (1 µg/mL, ARP33121_P050, Aviva Systems Biology, San Diego, CA, USA), CB2 (ADI-905-820-100, Enzo, Farmingdale, NY, USA), PPAR-α (ab24509, Abcam Biotech, Cambridge, UK), TRPV1 (1 µg/mL, WH0007442M1, Sigma, St. Louis, MO, USA) and TNF-α (OACA04183, Aviva Systems Biology, San Diego, CA, USA). For protein detection, a 1:10,000 dilution of goat anti-rabbit HRP conjugated secondary antibody (Jackson Immunoresearch 111-035-003, West Grove, PA, USA) was used for chemiluminescence reaction. ImageJ software was used to process and analyze the data (NIH, Bethesda, MD, USA). β-actin was used to equalize the signal bands.
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10

ChIP Assay for Transcription Factors

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The ChIP assays were performed according to previous studies with minor modifications (Hu et al., 2017 (link); Miao et al., 2006 (link)). Briefly, the primary hepatocytes transduced with Ad-shCp or Ad-shCon were cross-linked with 1% formaldehyde for 15 min, and 125 mM glycine was added for 5 min to quench the reaction. The cells were lysed with the lysis buffer (1% SDS, 10 mM EDTA, and 50 mM Tris-HCl, pH = 8.0) and sonicated eight times on ice (15 s ON, 90 s OFF). The supernatant was incubated overnight with the PGC1α (Abcam, UK: ab54481) or PPARα (Abcam, UK; ab24509) antibodies. After precipitation with protein A/G Sepharose beads, the fragmented DNA was pulled down and subjected to qPCR analysis. The sequences of the primers are listed in Table S3.
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