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18 protocols using dimethyl fumarate dmf

1

Oral Ginseng and DMF Pretreatment in Mice

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The standardized Korean red ginseng extract (Ginseng) is a water soluble red powder that is prepared and standardized as previous described [29 (link), 30 (link)]. Dimethyl fumarate (DMF) was purchased from Sigma (242926). Vehicle (double-distilled water), Ginseng (100 mg/kg/day, dissolved in double-distilled water), or DMF (100 mg/kg/day, suspended in 0.08% methylcellulose) were administered orally for 7 days to C57BL/6 WT and Nrf2−/− mice prior to HI as previous reports [11 (link), 29 (link)–32 (link)].
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2

Apoptosis Induction and Quantification in Cancer Cells

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Early apoptotic 624.38 Mel cells were generated by irradiation with 500 mJ/cm2 UV-C. Irradiated cells were incubated at least 16 h before they were used in further assays. For the chemical induction of apoptosis in cancer cell lines, cells were treated with either 50 μM Etoposide (Cayman Chemical) or 100 μM Dimethylfumarate (DMF, Sigma-Aldrich) [39 ] or left untreated as a control. After resting for 24 to 48 h, cells were detached using Accutase solution (Biolegend), centrifuged and resuspended in Anx Binding Buffer (10 mM HEPES, 140 mM NaCl, 2.5 mM CaCl2 in H2O). Neutrophils become apoptotic after 2 d of culture and were compared with freshly isolated neutrophils. Cell viability was determined by staining with AnxA5-FITC (Immunotools) and 7AAD (Sigma-Aldrich) according to the manufacturer's instructions and subsequent analysis in flow cytometry.
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3

Dissolving Compounds for Cell Studies

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Sulforaphane (SFN) (catalog no.: S8044, LKT Laboratories, Inc., St. Paul, MN) and Dimethyl Fumarate (DMF) (catalog no.: 242926, Sigma-Aldrich, St. Louis, MO) and epigallocatechin gallate (EGCG) (catalog no.: E4143, Sigma-Aldrich, St. Louis, MO) were dissolved in dimethyl sulfoxide (DMSO). Azidothymidine (AZT) (AIDS Reagent Program, Division of AIDS, NIAID, NIH Germantown, MD) and epigallocatechin gallate (EGCG) (catalog no.: G6817, LKT Laboratories, Inc., St. Paul, MN) were dissolved in water (50 mM stock).
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4

Synthesis and Characterization of Polymer Biomaterials

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Calcium hydroxide (Ca(OH)2, 98%) and orthophosphoric acid (H3PO4, 85%) were purchased
by Carlo Erba Reagents (Carlo Erba Reagents, Milano, Italy). ε-Caprolactone
(CL, 99%) and 1,5,7triazabicyclo[4.4.0]dec-5-ene (TBD, 95%) were purchased by Sigma-Aldrich, Germany. Arabic gum (AG) was
kindly gifted from the research group of Prof. Ciofani from Scuola
Superiore di Studi Universitari e Perfezionamento Sant’Anna,
CRIM Lab-Center for Applied Research in Micro and Nano Engineering.
Jeffamine (Elastamine RE-2000) was sold by Huntsman Corporation (Woodlands,
Texas, USA). Polyethylene glycol 8000 (PEG8000, MW = 8 kDa), carbodiimidazole
(CDI, 98%), deuterium oxide (99.9 atom %
D), PBS (Dulbecco’s phosphate-buffered saline solution pH =
7.4, 0.1 M), ethosuximide (Etho, MW = 141.168 g/mol),
and dimethyl fumarate (DMF, MW = 144.127 g/mol) were purchased from
Sigma-Aldrich, Germany. Fluorescein sodium salt (SF, MW = 412.3 g/mol)
and rhodamine B (RhB, MW = 479.02 g/mol) were purchased from Merck
(Deisenhofen, Germany). All reagents and solvents were used without
further purification. Solvents were of analytical laboratory grade.
Synthetized products were stored at 4 °C in the dark until used.
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5

Maintenance of Insulin-Secreting MIN6 Cells

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MIN6 cells at passage 30 were kindly gifted by Dr. Marcia Haigis (Harvard University, USA) and maintained in Dulbecco's modified Eagle's medium (DMEM) containing 25 mmol/l glucose, supplemented with 15% fetal bovine serum (FBS), 100 units/mL penicillin, 100 μg/mL streptomycin, 2 mmol/l L-glutamine, and 5 μL/l β-mercaptoethanol in humidified 5% CO2, 95% air at 37°C as previously described [21 (link)]. The cells at passages 42–48 were used in the current study. There was no significant difference among the passages in their glucose responsiveness and cytotoxic susceptibility to a variety of stressors. H2O2 solution, glucose oxidase, S-nitroso-N-acetylpenicillamine (SNAP), sodium arsenite, tert-butylhydroquinone (tBHQ), β-mercaptoethanol, hexadimethrine bromide, dimethyl fumarate (DMF), and 1-[2-cyano-3,12-dioxooleana-1,9(11)-dien-28-oyl]imidazole (CDDO-Im) were purchased from Sigma (Saint Louis, MO).
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6

Fumarate and Maleate Compound Preparation

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Dimethyl fumarate (DMF) (Sigma-Aldrich) was resuspended in 100% DMSO to 100mM and further diluted at indicated dilutions before use in all in-vitro experiments. For in-vivo experiments, DMF was dissolved in 100% DMSO or 0.8% methyl cellulose at 50mg/mL diluted at indicated dilutions before use.
Monomethyl fumarate (MMF), Diethyl fumarate (DEF), Dimethyl maleate (DMM), Diethyl maleate (DEM) and Fumaric acid (FA) were all obtained from (Sigma-Aldrich) and all resuspended in 100% DMSO to 100mM and further diluted at indicated dilutions before use in all in-vitro experiments.
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7

Dimethyl Fumarate Signaling Pathway

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Dimethyl fumarate (DMF) was provided by Sigma Aldrich Co. (St. Louis, MO, USA). PD98059 was provided by Calbiochem (La Jolla, CA, USA). Rabbit polyclonal antibody against phospho-p44/42 MAPK (p-ERK1/2, catalog n. 9101), p44/42 MAPK (ERK1/2, catalog n. 9102), phospho-AKT (catalog n. 4060S), AKT (catalog n. 9272S) and GAPDH (catalog n. 2118) were provided by Cell Signaling Technology (Danvers, MA, USA); Rabbit polyclonal antibody against Nrf2 (catalog n. ab137550) was provided by Abcam (Cambridge, UK). All reagents used for cell cultures and stripping buffer were purchased from Invitrogen Thermo Fisher Scientific (Monza, Italy).
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8

Dimethyl Fumarate Dosage Preparation

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Dimethyl fumarate (DMF) was obtained by Sigma-Aldrich (St. Louis, MO, United States). A selective p38 MAP kinase inhibitor SB202190 was purchased from Abcam (Cambridge, United Kingdom). All other chemicals and reagents were purchased by Sigma-Aldrich unless otherwise stated. The stock solution of DMF was prepared using DMSO and diluted with cell culture medium to obtain final dose for each treatment. As indicated, vehicle (0.2% v/v DMSO) corresponds to the amount present in the highest dosage and was used in all experiments to exclude unspecific and toxic effects.
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9

Metabolomic Analysis of Cell Viability

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All the reagents used were analytical grade or of the highest grade available. Dimethyl sulfoxide (DMSO), Dulbecco’s modified Eagle’s medium (DMEM) high glucose, methoxyamine hydrochloride (≥ 98%), N,O-bis(trimethylsilyl)trifluoroacetamide with 1% trimethylchlorosilane (BSTFA + 1% TMCS), sodium bicarbonate, sodium chloride (NaCl, ≥ 99.5%), trypan blue solution 0.4% (w/v), trypsin–EDTA solution, 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2H-tetrazolium bromide (MTT), dimethyl fumarate (DMF) and all standards used throughout the work were obtained from Sigma-Aldrich (St. Louis, Missouri, USA). An antibiotic solution of 10,000 U mL−1 penicillin/10,000 µg mL−1 streptomycin, Hanks’ balanced salt solution (HBSS), and heat-inactivated fetal bovine serum (FBS) were obtained from Gibco Invitrogen (Barcelona, Spain). Methanol (≥ 99.9%), chloroform (≥ 99.8%), and pyridine (≥ 99%) were obtained from VWR (Leuven, Belgium). All sterile plastic material was obtained from Corning Costar (United States of America).
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10

Neuroprotective Effects of DMF under Oxidative Stress

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Dimethyl fumarate (DMF) and Hydrogen peroxide solution (H2O2, 30% w/w in H2O, contains stabilizer) was purchased from Sigma–Aldrich (St. Louis, MO, USA). DMF was dissolved in DMSO and aliquots were kept in dark in −20 °C freezer. H2O2 was kept at 4 °C refrigerator. Newly opened bottle of H2O2 was used and freshly prepared and diluted H2O2 stock solution was immediately added into cell culture medium to achieve the desired working concentration. The concentration responses for both H2O2 (ranging from 0, 10, 20, 40, 80, and 100 μM) and DMF (ranging from 0, 10, 20, and 40 μM) and time course for both H2O2 and DMF (ranging from 4, 6, 18, 24, 48, and 72 h) were studied in the culture medium and then the optimal conditions (40 µm H2O2 and 10 µm DMF) for studying DMF neuroprotective effect under H2O2-induced oxidative stress were determined for subsequent experiments. In most experiments unless otherwise noted, the cultures were divided into four different groups which were treated in the following way: (1) Control with same concentration of DMSO used to dissolve DMF; (2) DMF alone; (3) H2O2 alone with same concentration of DMSO; (4) DMF + H2O2. At least three separate cultures were set up for each experiment.
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