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6 protocols using thbs1

1

Protein Expression Analysis by Western Blot

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Total cell lysates (20 μg) were resolved by 10% SDS–PAGE, transferred to nitrocellulose membranes, and immunoblotted with antibodies for THBS1, Cyclin D1, CDK4, CDK6, p18, p21 (Cell Signaling) and β-Actin (Sigma) for loading controls. Immunoreactive bands were identified using an enhanced chemiluminescence reaction (Perkin-Elmer), and visualized by autoradiography.
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2

Quantitative Protein Analysis of sEVs

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sEV and cells were resuspended in RIPA lysis buffer (Millipore-Sigma) and incubated on ice for 20 min prior to centrifugation at 12,000 g for 10 min. Supernatants were used for western blotting in SDS-PAGE electrophoresis. Protein concentration was determined by a BCA kit (Thermofisher). The following antibodies were used: ADIPOQ (AB3269P, Millipore-Sigma), CD36 (ab133625, Abcam), HSP90alpha (PA3–013, Thermofisher), POSTN (ab14041, Abcam), PGAM1/4 (sc-376638, Santa Cruz); THBS1 (14778, Cell Signaling), ITGB1 (4706, Cell Signaling), EGFR (2232, Cell Signaling), SPARC (8725, Cell Signaling), IGFBP5 (AF578, R&D systems), CD9 (ab92726, Abcam), CD63 (ab68418, Abcam), CANX (ab22595, Abcam) and FASN (ab22759, Abcam). Given the large difference in the abundance for some of the proteins among different cell types, some of the blots were overexposed to show the signal in as many cell types as possible. Because of this, in some cases, the signal is beyond the linear range, and thus the quantification might not be absolutely accurate. Band intensity quantification was performed using ImageJ software (NIH).
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3

Protein Extraction and Western Blot

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The protein extraction, concentration measurement and imaging were performed referring to the method described before [16 (link)]. Rabbit monoclonal anti-mouse BRAF, THBS1, p-ERK, p-MEK, ERK, MEK and Cyclin D1 (Cat Nr. 14814, 37879, 4370, 9154, 4695, 4694 and 2978, Cell Signaling Technology, Germany), rabbit monoclonal anti-rabbit β-actin (Cat Nr. AC026, ABclonal, USA) were used as primary antibodies in the study.
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4

Quantitative Protein Analysis of sEVs

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sEV and cells were resuspended in RIPA lysis buffer (Millipore-Sigma) and incubated on ice for 20 min prior to centrifugation at 12,000 g for 10 min. Supernatants were used for western blotting in SDS-PAGE electrophoresis. Protein concentration was determined by a BCA kit (Thermofisher). The following antibodies were used: ADIPOQ (AB3269P, Millipore-Sigma), CD36 (ab133625, Abcam), HSP90alpha (PA3–013, Thermofisher), POSTN (ab14041, Abcam), PGAM1/4 (sc-376638, Santa Cruz); THBS1 (14778, Cell Signaling), ITGB1 (4706, Cell Signaling), EGFR (2232, Cell Signaling), SPARC (8725, Cell Signaling), IGFBP5 (AF578, R&D systems), CD9 (ab92726, Abcam), CD63 (ab68418, Abcam), CANX (ab22595, Abcam) and FASN (ab22759, Abcam). Given the large difference in the abundance for some of the proteins among different cell types, some of the blots were overexposed to show the signal in as many cell types as possible. Because of this, in some cases, the signal is beyond the linear range, and thus the quantification might not be absolutely accurate. Band intensity quantification was performed using ImageJ software (NIH).
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5

Western Blot Analysis of Mouse Heart Proteins

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The mouse heart tissues were homogenized in 0.5 ml of RIPA (1:1000 PMSF, Solarbio Science, Beijing) buffer using small tubes and vibrated every 10 min for 5 s at 4°C, and the above process was repeated four times. Solubilized proteins were centrifugated at 13,500 rpm for 25 min, and the supernatant was then collected. The protein concentration of each sample was quantified using the BCA Protein Assay kit (Beyotime, Shanghai). Protein lysates of each group were separated by electrophoresis with SDS-PAGE and electro-transferred onto a PVDF membrane (Millipore). Non-specific proteins on membranes were blocked with 5% non-fat dried milk for 2 h at room temperature, and the membranes were incubated overnight with the following primary antibodies (at a 1:1000 dilution, 4 °C): PRKG1, Ppm1k, Pltp, Hacd2, (ABclonal Technology, Wuhan, China); Pir (Abcam Technology, USA); Thbs1, (Cell Signaling Technology, Danvers, MA); Tmem70, β-tubulin (Santa Cruz Biotechnology). Then, the membranes were incubated with anti-mouse/anti-rabbit IgG antibody (ABclonal Technology, Wuhan, China) at a 1:10000 dilution for 1 h at room temperature. The specific complex was determined by an enhanced chemiluminescent (ECL) kit (Meilun, Dalian, China) and a multiplex fluorescent imaging system (ProteinSimple, CA).
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6

Exosomal Protein Profiling Protocol

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Exosomes were lysed with RIPA buffer [50 mmol/L Tris (pH 8.0), 150 mmol/L NaCl, 0.5% deoxycholate, 0.1% SDS, and 1.0% NP-40] containing protease inhibitor cocktail (Roche). Protein lysates (20 μg) were loaded onto a 4–20% Tris–glycine gradient gel (Biorad), transferred onto PVDF membranes and Western blotting was performed as per standard protocols. Following transfer, membranes were cut according to predicted molecular sizes and probed with following antibodies: THBS1 (Cell Signaling Technology, 37879), CD9 (Cell Signaling Technology, 13174), CD63 (System Biosciences, EXOAB-CD63A-1), Alix (Cell Signaling Technology, 2171), TSG101 (System Biosciences, EXOAB-TSG101-1) and Gelsolin (Cell Signaling Technology, 12953).
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