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Mmessage machine sp6 transcription kit

Manufactured by Thermo Fisher Scientific

The MMessage Machine SP6 transcription kit is a laboratory equipment product designed for in vitro transcription. The kit provides the necessary reagents and protocols to synthesize capped and polyadenylated RNA transcripts from linearized DNA templates using the SP6 RNA polymerase.

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7 protocols using mmessage machine sp6 transcription kit

1

Functional Characterization of Nagk Kinase

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Kinases were subcloned into pCS2 plasmids, and these constructs were used for all further experiments. A kinase-dead Nagk mutant was generated by introducing a threonine to methionine substitution at amino acid 128 (NagkT128M) by site-directed mutagenesis. cDNAs encoding Pgm3, Uap1, Dpagt1 and Ngyl1 were obtained from Open Biosystems, and Drosophila CG6218/DNagk cDNA was obtained from the Drosophila Genomics Resource. mRNAs were generated using the mMessage Machine SP6 transcription kit (Ambion). Nagk was subcloned into the pMAL vector (New England Biolabs), and recombinant MBP-tagged Nagk was expressed and purified according to manufacturer’s protocol.
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2

CRISPR-Cas9 Mediated MSANTD2 Mutagenesis

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MSANTD2 mRNA was transcribed in vitro (mMessage Machine SP6 Transcription Kit, Ambion) from the corresponding cDNA sequences in the pcS2 + vector synthetized by GenScript. For microinjections, the Cas9-sgRNAs mix was combined in a 1:1 volume ratio with MSANTD2 mRNA at a 100 ng/µl concentration. The presence of mutations at the MSANTD2 sgRNA loci in the rescued embryos was verified by Sanger sequencing. For that, injected embryos were collected and DNA extractions were conducted for the three conditions (MSANTD2 sgRNA 1 + 2 + 3 + 4, MSANTD2 sgRNA 1 + 2 + 3 + 4 + MSANTD2 mRNA, scrambled). Multiple pics (mutations) were observed after sequencing at sgRNA loci for the MSANTD2 sgRNA 1 + 2 + 3 + 4 and MSANTD2 sgRNA 1 + 2 + 3 + 4 + MSANTD2 mRNA conditions compared to the scrambled condition, for which only unique pics were observed (no mutations).
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3

Notch-Induced Neurogenesis in Zebrafish

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In this experiment, a variant of zebrafish notch1a, notch1a-intracellular domain (NICD), was used, which encodes a Notch receptor that is constitutively active in neurogenesis (50 (link)). A pCS2+ plasmid containing the cDNA coding for CAAX-GFP (membrane label) and the Notch-intracellular domain (NICD) (50 (link)) were linearized, and mRNAs synthesized using the mMessage Machine SP6 transcription kit from Ambion, following the manufacturer’s instructions. The mRNAs were phenol: chloroform purified, diluted in RNAse-free water, and frozen at -80°C until use. The effects of this NICD mRNA injection are attributed to high NOTCH activity in general (50 (link)). The pCS2+ GFP-CaaX was generated after subcloning the GFP-CaaX construct from a Tol2 kit plasmid (51 (link)).
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4

Mosaic Labeling of Neural Progenitors

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Plasmids containing the cDNA coding for CAAX-GFP (membrane marker), H2B-RFP (nuclei marker) and the dominant negative form of Suppressor of Hairless (DN-Su(H)) [32 (link)] have been linearized and mRNAs have been synthesized using the mMessage Machine SP6 transcription kit from Ambion. mRNAs were injected either at the one-cell stage for ubiquitous expression or into one blastomere between the 16- to 64-cell stages for mosaic labelling of neural progenitor cells. The mRNA was injected at 10–150 pg per embryo and did not exceed half the volume of a cell.
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5

Microinjection-based Fluorescence Complementation

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The pCS2+ BiFC constructs were linearized with Not1, and mRNA was transcribed using a mMessage Machine Sp6 Transcription kit (Thermo Fischer Scientific) according to manufacturer’s instructions. Microinjections were performed using a Picospritzer II (Parker Instruments) into the 1–2 cell stage embryo as previously demonstrated [38 , 67 –69 ]. For TDP-43 fading experiments a 1:1 ratio of complementary mRNA (20 pg) was injected with 100 pg H2B-mCerulean3 mRNA (n = 3). In control experiments assessing the nonspecific fluorescence reconstitution, an adjusted 1:5 ratio of fluorophore fragment control mRNA (CC155) and TDP-43-fused fragment (VN155-TDP-43) was used to adjust for different construct lengths (CC155 and VN155-TDP-43 are encoded by 303 and 1755 base pairs, respectively, three independent experiments, n = 36 per experiment). For Fus experiments, 100 pg Fus (or 50 pg of CC155-mKate2 in control experiments) and 400 pg H2B-mCerulean3 mRNA was injected (n = 3). Images were taken on either a M165FC fluorescent stereomicroscope (Leica) or TCS SP5 Confocal Microscope (Leica) with settings kept constant within experiments.
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6

Dominant-Negative PYK2 Expression in Oocytes

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An eGFP-linked dominant-negative construct encoding the N-terminal ERM domain (aa1–370) of PYK2 was amplified from the human PYK2 transcript variant 1 cDNA (Origene, Rockville, MD) using the following primers: (forward; CCCAAGCTTATGTCTGGGGTGTCCGAGCCC); (reverse; CCCAAGCTTGCTGTTCCGCTTCTCACCATCTT) which contained a Hind III site used to ligate the product into the N-terminal cloning site of pEGFP-N1 (Clontech, Mountain View, CA). The PERM-eGFP construct was excised with Hind III and Xba I and cloned into pSP64 (Promega, Madison, WI). Complimentary RNA (cRNA) was prepared with the mMessage machine SP6 transcription kit (ThermoFisher, Grand Island, NY). Expression of the eGFP and PERM-eGFP constructs in oocytes was carried out by microinjection of MII-stage oocytes with approximately 5pl of cRNA (3.5 µg/ml), followed by a 4hour incubation in FHM + 4mg/ml BSA to allow protein expression which was confirmed by monitoring eGFP fluorescence via confocal microscopy.
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7

DENV Genome Replication Initiation

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Plasmid pFK-DVs containing the full-length DENV-2 genome (strain 16681), pFK-sgDVs-R2A and pFK-sgDVs-R2A-GND which are the sub-genomic DENV replicon and GND mutant based on the DENV-2 genome (strain 16681) have been previously described (48 (link)). To initiate virus replication, all DENV plasmid constructs were linearized with XbaI prior to in vitro RNA transcription with the mMessage Machine SP6 transcription kit (Thermo Fisher Scientific) and transfection of viral RNA into Huh7.5 cells by transfection with Lipofectamine 3000 (Thermo Fisher Scientific) following manufacturer’s recommendations.
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