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Dimethyl sulfoxide d6

Manufactured by Cambridge Isotopes
Sourced in United States

Dimethyl sulfoxide-d6 is a deuterated organic solvent commonly used in research and analytical applications. It serves as a highly polar, aprotic solvent that is miscible with a wide range of organic compounds. The deuterated nature of this compound allows for its use in nuclear magnetic resonance (NMR) spectroscopy studies.

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29 protocols using dimethyl sulfoxide d6

1

NMR Spectroscopy of Mycobacterial Siderophores

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A Bruker DRX 500-MHz spectrometer equipped with BBI and QNP probes was used to record the spectra of amycobactin and kitamycobactin. The samples were dissolved in dimethyl sulfoxide-d6 (Cambridge Isotope Laboratories, Andover, MA) and heated to 40°C for data acquisition. Structural assignments of amycobactin (Text S1) and kitamycobactin (Text S1) were made based on 1-dimensional (1D) and 2D nuclear magnetic resonance (NMR) data from 1H, 13C, COSY, TOCSY, 1H-13C/15N HSQC, 1H-13C HMBC, and NOESY/ROESY experiments (Text S1). A Bruker Avance III HD spectrometer operating at a 1H frequency of 700.13 MHz equipped with a cryogenically cooled triple-resonance 5-mm HCN probe was used to record the spectra of a sample of [13C, 15N]streptomycobactin dissolved in dimethyl sulfoxide-d6 (Cambridge Isotope Laboratories, Andover, MA) in a sample tube, and the sample was heated to 35°C for data collection. The structure of streptomycobactin was assigned based on a series of 1D, 2D, and 3D NMR experiments using the [13C, 15N]streptomycobactin sample (Text S1). For the peptidyl backbone 13C assignments, the HNCACB and HNCOCACB experiments were optimized for fast data acquisition using parameters published by P. Schanda et al. in 2006 (33 (link)). Side-chain assignments were mapped with the (H)CCCONH and H(CCCO)NH experiments for 13C and 1H assignments, respectively (Text S1).
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2

Ertugliflozin API Sample Preparation

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Ertugliflozin active pharmaceutical gift sample was obtained from leading pharma organizations in Hyderabad. Reagents and chemicals used for the research were sodium hydroxide, hydrochloric acid, 30% hydrogen peroxide (analytical grades) formic acid (LCMS grade), acetonitrile (HPLC grade), procured from Honeywell Research Chemicals, India. The water used for the analysis was from a milli-Q instrument from Millipore, Amsterdam, Netherlands. Dimethylsulfoxide-d6 (NMR grade) from Cambridge Isotope Laboratories, Inc. D, 99.9% + 0.03% v/v.
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3

Detailed Analytical Chemistry Protocol

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All chemicals used throughout the study were of the highest quality. Methanol (>99.9% pure) was purchased from Fisher Chemical (Fair Lawn, NJ, USA). Dimethyl Sulfoxide-D6 (DMSO, >99.5% pure) was purchased from Cambridge Isotope Laboratories, Inc. (Tewksbury, MA, USA). For confirmation of sugars, d-mannitol (>98% pure), sucrose (>99.5% pure), d-(+)-raffinose pentahydrate (>98% pure), and d-(+)-trehalose dihydrate (>99.0% pure) were purchased from Sigma-Aldrich (St Louis, MO, USA. d-glucose (>99% pure) and inositol (>98%) were purchased from Cambridge Isotope Laboratories, Inc. and d-(-)-fructose (>98% pure) was purchased from BDH Analytical (Poole, UK). Ciceritol was isolated in-house (Briefly, a water extract of chickpeas was purified by reverse phase C18 HPLC, to afford ciceritol). Two phenolic compounds, (+)-catechin hydrate (98%) and (-)-epicatechin, were purchased from Sigma-Aldrich.
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4

Detailed Preparation of Enriched Compounds

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The 3D-enriched fragment library was purchased from Life Chemicals and divided into mixtures of 4–5 fragments as previously described [11 (link)]. Amino acids, uracil, thiamine-HCl, LB broth, biotin, and nicotinic acid were purchased from RPI Corp. The 5-fluoroindole, magnesium sulfate, succinic acid, calcium chloride, Iron(III) chloride, 15N ammonium chloride, L-Moses, and imidazole were purchased from Millipore Sigma. Potassium diphosphate, potassium monophosphate, sodium phosphate, manganese (II) chloride, zinc(I) chloride, and sodium chloride were purchased from Fischer Scientific. Cobalt (II) chloride, Ethylenediaminetetraacetic acid, and copper (II) chloride was purchased from Acros Organics. Boric acid was purchased from Mallinckrodt. Deuterium oxide and dimethyl sulfoxide-d6 were purchased from Cambridge Isotope Laboratories. GSK4027 was purchased from Cayman Chemicals and TP238 was synthesized previously [55 (link)].
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5

Synthesis of Polyurethane Hydrogel

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Isophorone diisocyanate (IPDI), poly(tetramethylene ether glycol) (PTMG, Mw 2000), 2,2-dimethylol propionic acid (DMPA), N,N-dimethylformamide (DMF), were purchased from Shanghai Aladdin Co. Ltd., China. 2-Hydroxy-1-[4-(2-hydroxyethoxy)phenyl]-2-methyl-1-propanone (Irgacure 2959), acrylamide (AAm), N,N′-methylenebisacrylamide (MBA), and triethylamine (TEA) were purchased from Shandong Xiya Chemical Industry Co., Ltd., China. Dimethyl sulfoxide-d6 was obtained from Cambridge Isotope Laboratories, Lnc., USA.
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6

NMR Characterization of Lassomycin Structure

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NMR data were acquired and processed as previously described (Rea et al., 2010 ; Sit et al., 2011 (link)). A Varian Inova 800-MHz spectrometer with a triple-resonance HCN cold probe and pulsed field gradients (PFGs) was used to record spectra. [13C, 15N]lassomycin was dissolved in dimethyl sulfoxide-d6 (Cambridge Isotope Laboratories, Andover, MA), and the sample was heated to 40 °C for data collection. Table S2 lists the experimental parameters used to acquire the NMR spectra for lassomycin. Tables S3–S4 list the proton, backbone nitrogen and carbon chemical shift assignments of the peptide. The 15N-HSQC (Fig. S1A) gave reasonably well-dispersed peaks, with 12 out of 16 unique backbone NH signals observed, indicating that lassomycin holds a defined structure in solution. The backbone NH signals for Arg3, Leu5, Arg14 and Ile16 could not be definitively assigned due to spectral overlap. Most of the proton chemical shift assignments were made based on data from the HCCH-TOCSY, 13C-NOESYHSQC and 15N-TOCSYHSQC experiments. Most of the carbon and nitrogen chemical shift assignments were made based on the backbone experiments HNCACB and CBCA(CO)NH (Sit et al., 2011 (link)).
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7

Synthesis and Characterization of Novel Compounds

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All
reagents purchased
were of analytical or reagent grade purity and were used as purchased
prior to experimentation. Anhydrous N,N dimethylformamide (99.8%) was obtained from Acros Organics, a division
of Thermo Fischer Scientific. Buffers for the calibration of the pH
electrode were from Thermo Scientific, Waltham MA. Quercetin was purchased
from INDOFINE Chemicals Inc. (Hillsborough, NJ). 4-Dimethyl aminopyridine,
hydrogen tetrachloroaurate (HAuCl4·3H2O),
and trimethylsilyl-bromide were purchased from Sigma-Aldrich, Milwaukee,
WI. Dimethyl sulfoxide-d6 was from Cambridge
Isotope Laboratories, Inc. MA. Dibenzyl phosphite, acetonitrile, carbon
tetrachloride (CCl4), N,N-diisopropylethylamine, and dichloro methane were purchased from
Sigma (St. Louis, MO). Methanol, hexane, ethyl acetate, sodium chloride
(NaCl), anhydrous sodium sulfate (Na2SO4), and
potassium dihydrogen phosphate (KH2PO4) were
purchased from Fisher Scientific, Pittsburg, PA. Nanopure water with
a specific resistivity of 18 MΩ was used in the preparation
of reagents. All of the reactions involving moisture or air-sensitive
reagents were carried out under Ar or N2 atmosphere. All
chemicals were of analytical or reagent grade and were used without
further purification.
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8

NMR Characterization of DLM Salts

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Salt formation was confirmed by 1H nuclear magnetic resonance (NMR) spectroscopy and impurities in DLM salts following preparation and storage were detected by 19F NMR spectroscopy. Samples were dissolved in dimethyl sulfoxide-d6 (Cambridge Isotope Laboratories, Inc., Andover, MA) at a concentration of 20 mg/mL. All NMR spectra were acquired on a Bruker DRX 500 MHz spectrometer (Karlsruhe, Germany) equipped with a BBFO z-gradient probe operating at room temperature. For 1H NMR spectra, the spectral sweep width was 20 ppm, acquisition time was 1.6 sec and number of scans was 16. For 19F NMR spectroscopy, 1H was decoupled during acquisition, spectral sweep width was 50 ppm, acquisition time was 1.4 sec and the number of scans was 64.
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9

NMR Characterization of Organic Compounds

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All NMR experiments
were performed
at 25 °C on a Varian Unity Plus 300 spectrometer or Varian Unity-Inova
500 MHz spectrometer equipped with a 5 mm triple-resonance 1H(13C/15N), z-axis pulsed-field
gradient probe head. For characterization purposes, samples consisted
of a ∼5 mM solution of each compound in chloroform-d (99.8% D, Cambridge Isotopes), dimethyl sulfoxide-d6 (99.9% D, Cambridge Isotopes), benzene-d6 (99.5%
D, Cambridge Isotopes) or acetone-d6 (99.9%
D, Cambridge Isotopes), and the spectra were referenced to residual
solvent peaks at 7.27, 2.50, 7.16, and 2.05 ppm, respectively. 1H-1D spectra were acquired at a resolution of 16k complex
points in the time domain with 32 accumulations each (sw = 6000 Hz,
d1 = 3 s).
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10

NMR Spectroscopy of Refined Samples

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NMR spectra were obtained using a Bruker Avance Digital 500 MHz NMR spectrometer (Bruker Corp., Billerica, MA) and an automatic sample changer, the BACS1. A 5 mm PABBO BB-1H/D Z-GRD probe was mounted onto the spectrometer. The 13C spectrum of each sample was recorded using an average of 1000 scans, and the 1H spectrum of the refined products (6–8 mg) was obtained using an average of 16 scans in dimethyl sulfoxide-d6 (Cambridge Isotope Laboratories, Inc., Tewksbury, MA). Chemical changes were reported in parts per million (ppm) units.
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