The largest database of trusted experimental protocols

42 protocols using yoda1

1

Rat Schwann cell and DRG neuron culture

Check if the same lab product or an alternative is used in the 5 most similar protocols
Primary rat Schwann cells were produced as described (Poitelon & Feltri, 2018 (link)) and grown with DMEM supplemented with 4 g/L glucose, 2 mM L-glutamine, 5% bovine growth serum, 2 μM forskolin, 50 ng/ml nerve growth factor, penicillin and streptomycin. Schwann cells were not used beyond the fourth passage. Rat dorsal root ganglia (DRG) neurons from Sprague–Dawley rat embryos were isolated at embryonic day 14.5 embryos. DRG were dissociated by treatment with 0.25% trypsin and mechanical trituration and 1.5 DRGs were seeded on collagen-coated glass coverslips as described (Poitelon & Feltri, 2018 (link)). For GsMTx-4 (Alomone, STG-100) treatment, GsMTx-4 was solubilized in DMEM at 100 nM, then Schwann cells were treated with either DMEM or 100 μM of GsMTx-4 for 48 h (Bae et al., 2011 (link)). For Yoda-1 (Tocris, 5586) treatment, Yoda-1 was solubilized in DMSO at 1 mM, then Schwann cells were treated with either 0.5% of DMSO or 5 μM of Yoda-1 for up to 1 h (Lacroix et al., 2018 ).
+ Open protocol
+ Expand
2

Yoda1 Embryonic Viability Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Yoda1 (Tocris # 5586) was dissolved in DMSO to a stock concentration of 2.5 mM. This stock was added to 100 ml MYOB medium to a final concentration of 20 µM. Single mid-L4 hermaphrodites were picked onto 35 mm Yoda1-supplemented MYOB plates and control DMSO-only MYOB plates, each seeded with 10 μl of OP50 bacteria and allowed to lay eggs for 36 hr (plate one contains the brood from 0 to 36 hr post mid-L4). Each hermaphrodite was moved to a new 35 mm MYOB plate (with or without Yoda1) to lay eggs for another 24 hr and then was removed from the plate (this plate contains the brood from 36 to 60 hr post mid-L4). Twenty-four hours after removing the mothers, only fertilized embryos and larvae were counted to determine the brood size. Brood sizes were determined at 60 hr. Percentage of embryonic viability = (the number of hatched larva/the total number of hatched and unhatched animals) *100%.
+ Open protocol
+ Expand
3

Resveratrol Sensitizes Cells to TRAIL

Check if the same lab product or an alternative is used in the 5 most similar protocols
A 20 mM stock solution of resveratrol (Sigma-Aldrich) in DMSO was made fresh before each experiment. After cells were collected, but prior to shear/Yoda1 treatments, cells were incubated with 50 µM resveratrol for 1 h at 37 °C in serum-free media. To remove trace amounts of resveratrol remaining in solution that were not taken up by the cells, the samples were centrifuged at 300× g for 5 min, and the medium was aspirated. Cells were resuspended in serum-containing media in the presence or absence of 50 ng/mL TRAIL. For FSS experiments, cells were then sheared as described previously and plated in 12-well cell culture plates for 24 h. For Yoda1 experiments, cells were treated with 10 µM Yoda1 (Tocris) and then incubated for 24 h. The next day, apoptosis was analyzed using Annexin V/PI staining and flow cytometry. Yoda1 sensitization was calculated using the following formula: Yoda1 Sensitization=(%DMSO viability)(%Yoda1 viability)(%DMSO viability)100%
for each treatment condition (Control, TRAIL, resveratrol, and TRAIL+ resveratrol).
+ Open protocol
+ Expand
4

RBC Biophysics Modulation Protocols

Check if the same lab product or an alternative is used in the 5 most similar protocols
All treatments were performed in suspension on washed isolated RBCs diluted 12 times in DMEM (~42,000 RBCs/µL). After each treatment, RBCs were centrifuged at 200× g for 2 min and resuspended in chemical agent-free DMEM, except when otherwise stated. For Piezo1 activation, RBCs were pre-conditioned at the appropriate temperature for 20 min and then incubated with the allosteric modulator Yoda1 (Biotechne, Minneapolis, MD, USA) for 30 s. Except when otherwise stated, the Yoda1 concentration was 50 nM for immunofluorescence experiments and 100 nM for all other experiments. To induce a PKC-mediated Ca2+ permeability [56 (link)], RBCs were incubated for 20 min at 37 °C with 3 µM phorbol 12-myristate 13-acetate (PMA; Sigma-Aldrich, Saint-Louis, MO, USA) and 30 nM of the protein phosphatase inhibitor calyculin A from Discodermia calyx (CalA; Sigma-Aldrich). These agents were maintained throughout the whole experiment. To deplete membrane chol, RBCs were incubated with the chol-removing agent methyl-β-cyclodextrin (mβCD; Sigma-Aldrich) for 15 min at 0.6 mM at 37 °C, except when otherwise stated. To replete membrane chol after depletion, RBCs were incubated with 7.5 µg/mL of mβCD:chol (Sigma-Aldrich) for 60 min and then in a mβCD:chol-free medium for an additional 90 min to allow time for newly inserted chol to distribute in the appropriate membrane regions.
+ Open protocol
+ Expand
5

Pharmacological Agents Solubilization Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Yoda1 (Tocris), staurosporine (Sigma), PD98059 (Merck), SP600125 (Cambridge Bioscience), and SB203580 (Merck) were all solubilized in DMSO. ATP, gadolinium, and ruthenium red were all obtained from Sigma-Aldrich and dissolved in H2O. Dooku1 and compound 2e (16 (link)) were synthesized at the University of Leeds and solubilized in DMSO.
+ Open protocol
+ Expand
6

Pharmacological Modulation of Signaling Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
Gadolinium chloride and Yoda1 were purchased from Tocris Bioscience (Bristol, UK). Ruthenium Red was purchased from Cayman Chemical (Ann Arbor, MI). GsMTx4 was purchased from both Tocris Bioscience and Alomone Labs (Jerusalem, Israel). Rabbit anti-phospho-Akt (Ser473) (#4060), rabbit anti-phospho-ERK1/2 (T202/Y204) (#9101), and rabbit anti-ERK1/2 (#9102) were obtained from Cell Signaling Technology (Danvers, MA). Goat anti-Akt (sc-1618) was from Santa Cruz Biotechnology (Dallas, Tx).
+ Open protocol
+ Expand
7

Pharmacological Compound Preparation Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Yoda1, ruthenium red, and Dooku1 were purchased from Tocris (Avonmouth, Bristol, UK). Capsaicin was purchased from Sigma (St. Louis, MO, USA) and the stock solutions were made with 99.5% ethanol. All stock solutions were stored at −20 °C.
+ Open protocol
+ Expand
8

Calcium Imaging of HUVECs on Matrigel

Check if the same lab product or an alternative is used in the 5 most similar protocols
HUVECs were plated on a thin-layered Matrigel-coated plate for 1 h to allow cells to attach. The cells were then loaded with Calcium 6-QF (Molecular Devices) in a Minimum Essential Medium–Hanks’ balanced salt solution (HBSS; 1:1) for 30 min at 37 °C in a CO2 incubator (32 (link)). The cells were washed gently with HBSS buffer with 2 mM Ca2+. The cells were imaged by using a Zeiss Axio observer Z1 with a 20× objective, and images were captured at 400-ms intervals. HBSS buffer with 2 mM Ca2+ was used during imaging. The intracellular calcium elevation of individual cells was analyzed with MetaMorph software (Molecular Devices). Cells overloaded with dye or only faintly fluorescent were excluded from analysis. The chemicals used in calcium imaging experiments included Yoda1 (Tocris; 5586), GsMTx4 (Abcam; ab141871), 5,6- eicosatrienoic acid (Santa Cruz Biotechnology; sc-221066), arachidonic acid (Sigma; A3611), HC067047 (Tocris; 4100), GSK1016790A (Sigma; G0798), AACOCF3 (Tocris; 1462), and YM26734 (Tocris; 2522).
+ Open protocol
+ Expand
9

Shear Stress Activation of Piezo1

Check if the same lab product or an alternative is used in the 5 most similar protocols
After overnight serum starvation, cells were treated with dimethyl sulfoxide (DMSO; 276855), 10 μM Yoda1 (Tocris, 5586, reconstituted in DMSO) or EGF (10 ng/ml; PeproTech, 400-25, reconstituted in deionized water) for indicated durations. Experiments involving inhibitors included a 30-min pretreatment with EGFR kinase inhibitor 1 μM PD153035 (Sigma-Aldrich, SML0564), SFK inhibitor 200 nM PP2 (Sigma-Aldrich, P0042), or p38 inhibitor 10 μM SB202190 (Abcam, ab120638), all reconstituted in DMSO. All treatments were prepared reusing starvation medium.
Shear stress was delivered to cells seeded on microfluidic chambers (Ibid 80166, I Luer 0.2 mm height, polymer coating) using a peristaltic pump (Thermo Fisher Scientific, 16609762) with a starvation medium flow rate of 4 ml/min. According to the manufacturer’s instructions, shear stress (τ) is the product of flow rate (ϕ, 4 ml/min), medium’s dynamical viscosity [η ≈ 0.0073 dynes·s/cm2 for serum-free DMEM (87 (link))] and a chamber-dependent correction factor (512.9), yielding ≈ 15 dynes/cm2, a shear stress value shown to activate Piezo1 (9 (link), 10 (link)).
+ Open protocol
+ Expand
10

Yoda1-Induced Calcium Signaling in HMVEC

Check if the same lab product or an alternative is used in the 5 most similar protocols
HMVEC were loaded with Fluo-4 AM (1 mM; Invitrogen) per the manufacturer’s protocols. Images were acquired and analyzed with CellSens Dimensions (Olympus Corp.). The solution contained 140 mM NaCl, 2 mM CaCl2, 1 mM MgCl2, 10 mM HEPES, 10 mM glucose, and 20 mM mannitol (320 mOsm) (pH 7.3). Increases in fluorescence were achieved by perfusing 2 µM of Yoda1 (Tocris Bioscience) and washed with control solution. Cells with a large baseline fluorescence signal (>20 arbitrary units) were excluded from the analysis.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!