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3 protocols using bax inhibiting peptide v5

1

Analyzing Transcriptional Regulators in Mycobacterial Infection

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Anti-LXRα (ab41902 Abcam), anti-ATF1 (sc270, Santa Cruz), anti-ATF3 (sc188, Santa Cruz), anti-ATF5 (sc377168, Santa Cruz), anti-RXRA (sc553, Santa Cruz), anti-RARA (sc551, Santa Cruz), anti-MEF2A (ab7606. Abcam), anti-MEF2C (ab64644, Abcam), anti-LC3 (NB100-2220, Novus), anti-β-actin (sc-1616, Santa Cruz), anti-H3K27ac (ab4729),anti-NCoR (ab24552), anti-KAT3B/p300 (ab14984), anti-KAT13A/SRC1/NCoA1 (ab84), anti-H3K4me1 (ab8895, abcam), anti-PPARγ (ab41928, Abcam), anti-Mtb-FITC (ab20962, Abcam), anti-rabbit Alexa647 (A-21245, Life Technologies), Prolong Gold with Dapi (Life Technologies), anti-rabbit-Alexa488 (Life Technologies), Bodipy 493 (Life Technologies). TO901317, ATRA and BAX Inhibiting Peptide V5 were bought from Sigma and resupended in DMSO. Nelfinavir (Nel) and Ritonavir (Rit) were obtained through the AIDS Research and Reference Reagent Program, Division of AIDS, National Institute of Allergy and Infectious Diseases. Auto Histone ChIP-seq Kit (Protein A) was bought from Diagenode.
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2

BAX Inhibition and Pifitrin-α Protocol

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BAX Inhibiting Peptide V5 (Catalogue Number. B1436) and Pifitrin-α (Catalogue Number. 506132) were obtained from Sigma-Aldrich (St. Louis, MO, USA).
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3

Spinal Cord Neuroprotection Assay

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Spinal-cord cultures were exposed to the H2S donor, Na2S (SIGMA-Aldrich, Milan, Italy), following the same protocol described in Davoli et al., [1 (link)]. All experiments were performed between 10 and 12 days in vitro (DIV). For imaging experiments, cells were plated on 13-mm cover glasses. At 10 DIV, the cells were pre-exposed to the BAX Inhibiting Peptide V5 (SIGMA-Aldrich, Milan, Italy; 50 µM) or necrostatin-1 (Merck S.p.a., Roma, Italy; 5 and 15 µM) for 1 h, and then co-exposed to 100 µM and 200 µM Na2S for 18 h. After 18 h, the cells were fixed in paraformaldehyde (4%). To visualize motor neurons, cultures were stained with SMI-32 (Covance, Princeton, NJ, USA; 1:1000), and nuclei were stained with Hoechst 33342 (SIGMA-Aldrich, Milan, Italy). SMI-32-positive cells were quantified by direct counting, and their number was normalized to the untreated spinal-cord preparation. For toxicity experiments, we performed a Student’s t-test, setting the significance to p < 0.05.
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