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Sybr green pcr master mix kit

Manufactured by Roche
Sourced in United States, Switzerland, China, Germany

The SYBR Green PCR Master Mix Kit is a reagent used for real-time PCR (polymerase chain reaction) analysis. It contains all the necessary components for the amplification and detection of DNA sequences, including a DNA polymerase, nucleotides, and SYBR Green, a fluorescent dye that binds to double-stranded DNA. The kit is designed to provide a simple and efficient way to perform real-time PCR experiments.

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38 protocols using sybr green pcr master mix kit

1

Myocardial RNA Quantification Protocol

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Total RNA in the myocardial tissues of each group was extracted by using an RNA extraction kit (Invitrogen, Carlsbad, California, USA). The miR-93, LIMK1, RhoA, ROCK1, U6 and glyceraldehyde phosphate dehydrogenase (GAPDH) primers were designed by Invitrogen (Carlsbad, CA, USA) (Table 1), the the internal reference of miR-93 was U6, and the internal reference of LIMK1, RhoA and ROCK1 was GAPDH. The RNA was then reversed to obtain cDNA according to the PrimeScript RT kit instructions. RT-qPCR was performed by SYBR Green PCR Master Mix kit (Roche, Arizona, USA). The relative transcription levels of the target genes were calculated by 2-ΔΔCt method. The experiment was repeated three times and the final data was averaged.
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2

Quantitative Real-Time RT-PCR for Gene Expression

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The total RNA was isolated from cells and tissue extracts while using TRIzol reagent (Invitrogen). Reverse transcription was performed using a Maxima First Strand cDNA Synthesis Kit (Thermo Scientific). Quantitative real-time RT-PCR was performed while using a SYBR Green PCR Master Mix Kit (Roche Diagnostics, Indianapolis, IN, USA)) and a CFX Connect Real-Time PCR system (Bio-Rad). The PCR conditions were, as follows: 45 cycles of 95 °C for 30 s, 60 °C for 10 s, and 72 °C for 15 s. The primer sequences are in Supplementary Table S1. GAPDH was used as an internal standard.
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3

Quantitative RNA Expression Analysis

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Total RNA was isolated from cells and tissue extracts, using the Trizol reagent (Invitrogen, MA, USA). Reverse transcription was performed using the Maxima First Strand cDNA synthesis kit (Thermo scientific, MA, USA). Quantitative real-time RT-PCR was performed using a SYBR Green PCR master mix kit (Roche Diagnostics, Indianapolis, Indiana) and a Light Cycler 96 instrument (Roche Diagnostics). PCR parameters were as follows: 45 cycles of 95°C for 30 s, 60°C for 10 s, and 72°C for 15 s. Primer sequences were as follows: human Collagen forward, 5′-CACACGTCTCGGTCATGGTA-3′, and reverse, 5′-AAGAGGAAGGCCAAGTCGAG-3′; mouse collagen forward, 5′- GCCTTGGAGGAAACTTTGCTT- 3′ and reverse, 5′- GCACGGAAACTCCAGCTGAT -3′; human CTGF forward, 5′-CACCCGGGTTACCAATGACA-3′, and reverse, 5′-TCCGGGACAGTTGTAATGGC-3′; mouse CTGF forward, 5′-CCAGACCCAACTATGATGCG-3′, and reverse, 5′-GTGTCCGGATGCACTTTTTG-3′; mouse TGF-β forward, 5′-AAATCAACGGGATCAGCCCC-3′, and reverse, 5′-GGATCCACTTCCAACCCAGG-3′; mouse αSMA forward, 5′ – CAGGCTGTGCTGTCCCTCTA - 3′, and reverse, 5′- CGGCAGTAGTCACGAAGGAA - 3′; human GAPDH forward, 5′-GGAGCCAAAAGGGTCATCAT-3′, and reverse, 5′-GTGATGGCATGGACTGTGGT-3′; mouse GAPDH forward, 5′- ACGACCCCTTCATTGACCTC -3′, and reverse, 5′- ATGATGACCCTTTTGGCTCC-3′. GAPDH was used as an internal standard.
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4

qRT-PCR Analysis of Target Genes

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TRIzol reagent (Cat#T9424, Sigma, USA) was used to extract Total RNA. A Roche Transcriptor cDNA Synthesis Kit (Cat#4897030001, Roche, Switerland) was used for reverse transcription. The expression of the target genes was evaluated with a SYBR Green PCR Master Mix Kit (Cat#4913914001, Roche, Switerland). ABI Prism 7500 rapid thermocycler (Applied Biosystems, USA) was utilized to carry out the experiment of qRT-PCR. The target genes primer sequences are as follows in Table 1.
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5

Comprehensive Sugarcane Stress Response

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The 15-fold diluent cDNA of different sugarcane tissues (root, bud, leaf, stem pith, and stem epidermis) and samples treated with ABA, SA, MeJA, PEG, NaCl, and S. scitamineum was used as the qRT-PCR template. Based on the ScWRKY5 gene sequence, the specific qRT-PCR primer pair ScWRKY5-QF/R (Table S2) was designed on the NCBI online software. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH, GenBank Accession No. CA254672) was used as the internal reference gene (Table S2). An ABI 7500 Real-Time PCR System (Applied Biosystems, Foster City, CA, USA) was used for qRT-PCR detection, and a quantitative reaction system was prepared according to the SYBR Green PCR Master Mix Kit instructions (Roche, Shanghai, China). Three technical replicates were set up for each sample, and sterile water was used as a template in the negative control. The relative expression of the target gene was calculated using 2-△△Ct method76 (link). The significance level of the data was analyzed using DPS 9.50 software, and graphs were plotted using Origin 8.0 software. In the smut pathogen infection test, the relative expression of the target gene was calculated with reference to the method of Su et al.77 (link).
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6

Quantifying Gene Expression in Neonatal Mouse Cardiomyocytes

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Total RNA samples were extracted from cultured neonatal mouse ventricular cardiomyocytes (NMVCs) and cardiac tissue using TRIzol reagent (Invitrogen, Carlsbad, CA, USA). The RNA was reverse-transcribed with cDNA reverse transcription reagent kits (FSQ-101, Toyobo, Japan), and qRT-PCR was carried out using an ABI 7500 fast real-time PCR system (Applied Biosystems) with the SYBR Green PCR Master Mix Kit (04913914001, Roche, Switzerland). The primers for qRT-PCR were synthesized by Sangon Biotech (Shanghai, China), and their sequences are listed in Table 1., U6 or GAPDH was used as an internal control.
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7

Quantifying RNA Expression in Mouse and Cardiomyocytes

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Total RNA samples were isolated from mouse heart or NRVCs using phenol/chloroform and complementary DNA synthesis was performed with high-capacity cDNA reverse transcription reagent kits (FSQ-101, Toyobo, Japan). The SYBR Green PCR Master Mix Kit (04913914001, Roche, Switzerland) was used in quantitative real-time PCR with LightCycler96 Real-Time PCR System (Roche, Switzerland) to quantify target genes. U6 or GAPDH served as an internal control. The primers for quantitative real-time PCR were commercially designed (Table S3).
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8

Quantifying Gene Expression by RT-qPCR

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Trizol (Invitrogen, Carlsbad, CA, USA) assay was adopted to extract the total RNA of the specimens. MALAT1, Notch-1, Collagen-I, Collagen-III, fibronectin and glyceraldehyde phosphate dehydrogenase (GAPDH) primers were synthetized by Invitrogen Inc. (Carlsbad, California, USA) (Table 2), GAPDH was used as the internal reference. Then RNA was reversely transcripted to cDNA by PrimeScript RT kit according to the instructions. RT-qPCR was conducted by SYBR Green PCR Master Mix kit (Roche, Indianapolis, IN, USA) according to the instructions. The relative expression of the target genes was calculated by 2-ΔΔCt method, △△Ct = △Ct experimental group - △Ct control group, △Ct = Ct (target gene) - Ct (internal reference).
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9

Characterization of Sugarcane Transcription Factor

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The sugarcane variety Yacheng05-179 was provided by the key laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture (Fuzhou, China). The Escherichia coli rosette, prokaryotic expression vector pET28a, the subcellular localization vector pCAMBIA 2300, and the plant expression vector pCAMBIA 1301 were obtained from Abmart, Inc. (Tokyo, Japan). The restriction enzymes SalI, SacI, XhoI, NheI, T4 DNA ligase, Ex-Taq enzyme, PrimeScript RT-PCR Kit, TaKaRa LA PCRTM in vitro Cloning Kit, DNA and protein molecular marker were purchased from TaKaRa (Tokyo, Japan). RQ1 RNase-Free DNase was purchased from Promega Corporation (Beijing, China), the SYBR Green PCR Master Mix Kit was provided by Roche (Shanghai, China), and the NADPNa2 and D-glucose 6-phosphate disodium salt were purchased from Sigma (San Francisco, CA, USA).
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10

Quantitative PCR Analysis of Gene Expression

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QPCR was performed using a LightCycler 480 with a SYBR Green PCR Master Mix kit (Roche Diagnostics) as previously described (6 (link), 22 (link)). The primer sets used were designed using the Roche primer design software (Roche Diagnostics) and are listed in Table 1. QPCR cycling conditions: initial step at 95°C followed by 45 cycles at 95°C for 10 sec, 61°C for 10 sec, and 72°C for 10 sec. The comparative threshold cycle (Ct) method was used to analyze the data and 18S rRNA was used for data normalization. We initially determined the Ct values of three potential housekeeping genes, GAPDH, Tubulin, and 18S rRNA in cDNA samples from isolated gonocytes cultured for 1 day after siRNA interference, and 18S rRNA showed that it presented minimal changes in Ct values between samples. Assays were performed in triplicate. All experiments were performed using a minimum of three independent sample preparations and the mean ± SEM are plotted.
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