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20 protocols using p p38 mapk

1

Western Blot Analysis of Signaling Pathways

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Keratinocytes and macrophages were harvested after FxRF and PM or H-PM treatment, and cells were then homogenized with lysis buffer. The supernatants of the lysates were obtained by centrifugation, and protein content was measured using a commercial kit. Lysis buffer containing 30 μg protein was separated on a polyacrylamide gel (12%). The proteins were then transferred onto nitrocellulose membranes. A solution containing 5% nonfat milk was used to block the membranes for 3 h, and the membranes were then incubated with primary antibodies (β-actin, p38 MAPK, P-p38 MAPK, Erk1/2, P-Erk1/2, JNK, P-JNK, iNOS, and COX-2 (Santa Cruz Biotechnology) (4 °C for 8 h), followed by incubation with secondary antibodies (anti-mouse IgG, Santa Cruz Biotechnology) at room temperature for 3 h. A chemiluminescent substrate was employed to develop the blots. The fluorescence images and calculation of band intensity were performed as previously reported [27 ].
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2

Macrophage Polarization Pathway Profiling

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All reagents were purchased from Sigma-Aldrich (UK), unless stated otherwise. RPMI 1640, penicillin streptomycin solutions were procured from Sigma-Aldrich. Recombinant mouse IFN-γ cytokine was purchased from eBiosciences (San Diego, CA). CD11b+ human and mouse MACS MicroBeads and LC Columns were purchased from Miltenyi Biotec. Primary antibodies including rabbit polyclonal iNOS, rabbit polyclonal CD-206, rabbit polyclonal, and mouse monoclonal β-actin were purchased from Santa Cruz Biotechnology. Rabbit monoclonal STAT3, pp38MAPK, pNF-kB, and Sphk-1 antibody were purchased from Santa Cruz. S-1PR1 and S-1PR3, HRP-linked anti-mouse IgG, and anti-rabbit IgG were purchased from Cell Signaling Technology. Anti-mouse/human-CD11b (CloneM1/70)-FITC-conjugated antibodies and their respective isotype control antibody including FITC rabbit IgG2bK (Clone RTK4530), PE Rat IgG2bK (Clone RTH4530), and PerCP/Cy5.5 rat IgG2bK (RTK4530) were purchased from Biolegend (Germany). Alexa fluor-488– and Alexa fluor 569–conjugated antibodies were purchased from Invitrogen. IFN-γ and IL-6 ELISA kits were purchased from R&D Systems (Darmstadt, Germany).
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3

Profiling Cellular Protein Expression

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Total cellular proteins were extracted using lysis buffer (5 mM EDTA, 300 mM NaCl, 0.1% NP-40, 0.5 mM NaF, 0.5 mM Na3VO4, 0.5 mM PMSF, and 10 μg/mL each of aprotinin, pepstatin, and leupeptin; Sigma-Aldrich). A total of 30–50 μg protein was separated using 10% SDS-PAGE and transferred to polyvinylidene difluoride membranes (Millipore, Bedford, MA, USA). Then immunoblotting was performed using antibodies against PD-L1 (clone E1L3N), GLUT1, HK2, PKM2, P-Akt, Akt (Cell Signaling Technology, Danvers, MA, USA), P-Erk, Erk, P-p38MAPK, p38MAPK, and β-actin (Santa Cruz Biotechnology, Dallas, TX, USA). Most images of western blots were from parallel gels and actin images were obtained from the stripped and re-probed blots. The immunoblots were visualized using an enhanced chemiluminescence detection system (Amersham Pharmacia Biotech, Uppsala, Sweden).
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4

Western Blot Analysis of Cardiac Proteins

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A portion of LV was homogenized in ice‐cold RIPA buffer and centrifuged at 12,000 g for 15 min at 4°C. The protein concentration was evaluated by the Bradford method using bovine serum albumin as a standard. Sixty micrograms of supernatant proteins were resolved on SDS‐PAGE and transferred to PVDF membrane (2 h). The transference was confirmed by Ponceau S staining. Membranes were blocked with 5% nonfat milk and probed overnight at 4°C with antibodies against P‐p38MAPK (1:1000, Santa Cruz Biotechnology), p38MAPK (1:1000, Santa Cruz Biotechnology), P‐PKCε (1:1000, Santa Cruz Biotechnology), PKCε (1:1000, Santa Cruz Biotechnology), calcineurin Aβ (1:1000, Santa Cruz Biotechnology), P‐HSP27 (1:500, Santa Cruz Biotechnology), PSer637 Drp1 (1:1000, Cell Signaling), and Drp1 (1:1000, Santa Cruz Biotechnology). Membranes were washed four times prior to addition of anti‐mouse (1:5000, Lobov) or anti‐rabbit (1:5000, Sigma‐Aldrich) secondary antibody and protein bands were analyzed by a chemiluminescent system. GAPDH or total (phosphorylated plus non‐phosphorylated forms) protein expression was used as housekeeping protein.
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5

Crocetin Effects on Cell Signaling

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3-(4,5-Dimethyl-2-thiazolyl)-2,5-diphenyl- tetrazolium bromide (MTT) and dimethyl sulfoxid (DMSO) were purchased from Sigma (USA) and Merck (Germany), respectively. Crocetin was obtained from MP Biomedicals (CAT No. 02193543; USA). Roswell Park Memorial Institute media 1640 (RPMI-1640), fetal bovine serum (FBS), penicillin- streptomycin and trypsin-ethylenediamine tetra acetic acid (EDTA) solution were purchased from Biowest (France). Primary antibodies against p38 MAPK, FAK, p-p38 MAPK, and p-FAK were purchased from Santa Cruz Biotechnology (USA).
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6

Optimized Western Blot Analysis of Liver Proteins

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To prepare liver tissue samples for Western blotting, equal amounts of protein (30 μg) were extracted and resolved on 7–12% SDS-PAGE gels. The separated proteins were then transferred to PVDF membranes (Millipore) and incubated overnight at 4 °C with primary antibodies specific to the target proteins. The following day, the membranes were incubated with anti-mouse, anti-goat, or anti-rabbit secondary antibodies (Santa Cruz Biotechnology) for 1 h at room temperature. Primary antibodies used were COX-2 (sc-376861), iNOS (sc-7271), NF-κB p65 (sc-8008), p-ERK (sc-7383), p-p38 MAPK (sc-7973), p38 MAPK (sc-7972), p-Akt (sc-7985-r), Akt (sc-8312), PI3-kinase p110β (sc-602), Nrf2 (sc-722), HO-1 (sc-136961), AMPK (sc-25792), Histone H1 (sc-393358), and β-actin (Sc-47778), all purchased from Santa Cruz Biotechnology. Other primary antibodies used included ERK (#9102), p-JNK (#9255), JNK (#9252), and p-AMPK (#2535) from Cell Signaling Technology, and GAPDH (GTX100118) from Gene Tex. The blots were developed using an ECL detection kit (Advansta, CA, USA), and a quantitative analysis of protein levels was performed using ImageJ 1.53e software (NIH, Bethesda, MD, USA).
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7

Western Blot Analysis of Protein Expression

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The transfected HUVECs were lysed with cell lysis buffer (Thermo Fisher Scientific) for total protein extraction. The concentration of protein was measured by a Bradford Protein Assay kit (Sangon Biotech, China). After vortexing for 5 min, equal amounts of protein from each sample were subjected to sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred onto polyvinylidene fluoride (PVDF) membranes (Thermo Fisher Scientific). The membranes were blocked with 5% non-fat milk and probed with antibodies against SIRT6, JNK, p-JNK, p38 MAPK, or p-p38 MAPK (1:1000, Santa Cruz Bio-Technology, USA) overnight at 4°C. Then, the membranes were incubated with the secondary antibody (1:5000, Santa Cruz Bio-technology) with horseradish peroxidase conjugated antibody for 2 h at room temperature. Finally, signal intensity of complexes was visualized with an enhanced chemiluminescence detection kit (Beyotime).
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8

Western Blot Analysis of Apoptosis and Inflammation Markers

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The differential protein expression of Bax, Bcl-2, cleaved caspase-3, ACHE, IL-1β, TNF-α, p-P38MAPK, and p-JNK in the various groups was determined by Western blotting. Cells were lysed in 100 μl RIPA lysis buffer and PMSF mixture (Beyotime, Shanghai, China) at 4 °C for 15 min. The BCA Protein Assay Kit (Beyotime, Shanghai, China) was used to determine protein concentrations. An equal amount of protein samples was separated by 4–12% SDS-PAGE and then transferred to 0.45 μm PVDF membranes (PMembrane, Beijing, China). After being blocked by 5% non-fat milk for 2 h, membranes were incubated with corresponding primary antibodies to ACHE (Servicebio, Wuhan, China), Bax (Abcam, Waltham, MA, USA), Bcl-2 (Bioss, Beijing, China), Cleaved caspase-3 (CST, San Antonio, TX, USA), IL-1β (Abcam, Waltham, MA, USA), TNF-α (Bioss, Beijing, China), p-P38MAPK (Santa Cruz, CA, USA) and p-JNK (CST, San Antonio, TX, USA) at 4 °C overnight. After that, we utilized the HRP-conjugated secondary antibodies to incubate the PVDF membranes at room temperature, and the imaging system (Analytik Jena, Jena, Germany) and enhanced chemiluminescence detection kit (Biosharp, Hefei, China) to detect the immunoblots.
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9

Astrocyte Cultures Elucidate HIV-1 gp120 Effects

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All the experiments were performed using SVG astrocytes. The cells were cultured in Dulbecco’ modified Eagle’s Medium (DMEM) that was supplemented with 10% fetal bovine serum and 1% non-essential amino acids, 1% sodium bicarbonate, 1% L-glutamine and 0.1% gentamicin. The cells in culture were maintained at 37 °C with 5% CO2. HIV1-gp120 (pSyngp120 JR-FL) plasmid used for transfection was originally constructed by Drs. Park and Seed (Department of Molecular Biology, and Melvin and Barbara Nessel Gene Therapy Center, Massachusetts General Hospital, Boston, MA, USA). Recombinant HIV-1 IIIB gp120 was obtained from NIH AIDS reagents program. Resveratrol was purchased from Sigma–Aldrich (St. Louis, MO). Resveratrol analog, TIMBD was synthesized and purified by us as reported previously31 (link). Resveratrol and TIMBD were dissolved in dimethyl sulfoxide (DMSO) prior to treatments. The concentration of DMSO in control experiments was always 1/1000th (vol/vol) of the final medium volume. Antibodies NFĸBp-65, p-p38 MAPK, p-AKT and Lamin-B were obtained from Santa Cruz Biotechnology (Dallas, TX, USA). Antibodies for p-cJUN, p-cFOS, pSTAT3, and GAPDH and appropriate anti-immunoglobulins antibodies were obtained from cell signaling (Danvers, MA, USA).
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10

Protein Extraction and Western Blot Analysis

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First, K562 cells were incubated for 10 minutes in solution A, which contained 1 × protease inhibitor and 1 × PhosStop cocktail (Roche, France), and then the treated cells were lysed in RIPA buffer (Thermo Fisher, Waltham, MA, USA). Control cells were lysed in RIPA buffer in the presence of 1 × protease inhibitor and 1 × PhosStop cocktail for 20 minutes. After sonication three times, the lysed cell product was centrifuged at 12000 rpm for 10 minutes at 4 °C. The protein concentration was measured using a Pierce® BCA protein assay kit (Thermo Fisher, Waltham, MA, USA). Western blotting analysis was performed as described previously50 (link). Anti-human actin, GAPDH, p38MAPK, p-p38MAPK, JNK, and p-JNK were obtained from Santa Cruz (Santa Cruz, CA, USA).
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