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42 protocols using cm1860 uv

1

Neurohistological Analysis of Rat Brains

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After behavioral testing was finished, experimental rats were overdosed with tribromoethanol and decapitated. Directly prior to this, a vaginal lavage was taken from each rat to identify the day of estrous. After decapitation, the brains were removed, and flash frozen for slicing. Brains were sectioned at 40 μm using a freezing cryostat (Leica CM1860 UV) and slices were mounted on gelatin-coated slides. A cresyl violet stain was performed for verification of cannula placement under a microscope.
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2

Retinal Ganglion Cell Complex Measurement

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Rats (4 rats per group) were sacrificed 3 days after intravitreal injection. Eyeballs were fixed in 4% formalin, and the samples were dehydrated in a graded series of ethanol (80%, 95%, and 100%) and embedded in paraffin. Samples were cut into 3 µm vertical sections using freezing microtome (CM1860 UV, Leica, Germany). The slices were stained with hematoxylin and eosin (H&E), visualized using a light microscope (Nikon) and analyzed using CaseViewer software (3DHISTEC; Sysmex, Budapest, Hungary). The thickness of the retinal ganglion cell body complex (GCC) was measured at 500, 1000, 1500 and 2000 µm from the optic nerve center.
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3

Cryomicrotomy and MALDI-TOF Analysis

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The organs were sectioned with a cryomicrotome (Leica CM 1860 UV) at 12-μm thickness in a 30–45% humidity atmosphere. The brain was transversally sectioned, the median lobe of the liver was axially sectioned, and consecutive transverse cross sections of the intestines (after the duodenal papillae for the duodenum) were also prepared. The tissue sections were mounted onto clean indium tin oxide (ITO) unpolished float glass slides (25 × 75 × 1.1 mm, Rs = 4–8 Ω, Delta Technologies LTD, Loveland, USA). The ITO glass slides were cleaned by sonicating for 6 min in subsequent baths of n-hexane and ethanol. Dust particles from the slides were removed using nitrogen before usage. The organs were randomly mounted onto the slides in order to minimize batch effects during analysis. Prior to analysis, the mounted tissue sections were desiccated under vacuum for 20 min. Then, 80–90 mg of norharmane (beta-carboline) MALDI matrix was dissolved in 2 ml of methanol. This solution was applied onto the slides with a sublimator device (HTX Technologies, LLC, Chapel Hill, USA) [22 ] at 140 °C for 180 s, and the samples were allowed to dry up in a vacuum desiccator for at least 20 min. Each plate was scanned (grayscale, 2400 dpi) to align the laser with a visual image. The plates were stored in vacuum bags in the − 80 °C freezer prior to MALDI-TOF analysis.
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4

Porcine Ear Skin Penetration Assay

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Fresh porcine ears were obtained from the local slaughterhouse and used within a few hours after slaughter. Prior to treatment, pig ears were rinsed in cold water and dried with a tissue. Three pieces of 2 × 2 cm2 intact skin (marked as areas 1, 2, and 3) without visible wounds were selected, and the hair in the regions was cut to approximately 1~3 mm with scissors. Three samples (100 μL/sample), including PBS, R&B solution, and PL/ACC-R&B NPs, were applied to areas 1, 2, and 3 of the porcine ears, respectively. After penetration at 32 °C for 6 h, the excess samples on the skin were carefully washed off, the skin tissue was taken from areas 1, 2, and 3 of the porcine ears (using a scalpel), scraped off the subcutaneous fat, and rapidly frozen in liquid nitrogen. After freezing, the skin tissues were embedded on circular specimen discs with a diameter of 2.2 cm using an OCT embedding agent, and skin sections (20 μm/section) were prepared using a cryo-microtome (CM1860 UV, Leica, London, UK). The fluorescence distribution in the cryo-sections was observed using an inverted fluorescence microscope (IX73, Olympus, Shinjuku, Japan).
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5

Tissue Fixation and Cryosectioning

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Printed tissues were fixed in 4% v/v paraformaldehyde for 1 h at room temperature and washed with DPBS three times. The fixed tissues were embedded in optimal cutting temperature compound (OCT, VWR) and sectioned using a cryostat (Leica, CM1860 UV) to generate 30-µm-thick sections on glass slides for immunostaining.
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6

Perfusion and Cryosectioning of Mouse Brains

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Mice were perfused with 0.9% saline and fixed with PBS (pH 7.4) containing 4% paraformaldehyde (Sigma). Brains were extracted and fixed in PBS containing 4% paraformaldehyde at 4 °C for 48–72 h. For cryoprotection, the brains were transferred to PBS containing 30% sucrose solution and incubated at 4 °C until they sunk. For cryosectioning, the brains were embedded with O.C. T (Tissue-TEK) and cut serially using a cryostat (CM1860UV, Leica). Thirty-micron-thick tissue slices were maintained in PBS containing 0.05% sodium azide at 4 °C.
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7

Multimodal Analysis of Gastric Cancer

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The postoperative gastric cancer tissues were embedded in OTC and cut into 10 μm serial frozen sections at −20 °C on a cryostat microtome (Leica CM 1860 UV). Two sets of tissue sections were mounted onto SUPERFROST PLUS slides (Thermo) for AFADESI-MSI. Two sets of tissue sections were mounted onto indium tin oxide (ITO)-coated glass slides for MALDI-MSI analysis. One set of tissue sections were stained with hematoxylin and eosin and evaluated by pathologists. The pathologists evaluated the cellular composition and heterogeneity of the tissue sections, and then selected a 6.5 × 6.5 mm area with the most significant tumor heterogeneity from the entire tissue section. Then, we cut the original tissue sample according to the rectangular area delineated by the pathologist, and only the regions with significant tumor heterogeneity were retained. New adjacent tissue sections were prepared on retained cancer tissues and mounted onto 10 × Genomics Visium array slides for spatially resolved transcriptomics analysis. Before AFADESI-MSI and MALDI-MSI analysis, the tissue sections were dried in vacuum for about 15 min.
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8

Immunofluorescent Characterization of hMSCs

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Hydrogels (1 cm diameter, 6 mg/mL) were incubated with media for 24 h and then seeded with 2 × 104 hMSCs. The cells were cultured for 48 h then fixed with 1 mL 4% paraformaldehyde (USB Corporation) for 30 min. After rinsing with fresh PBS, the samples were frozen with OCT and sectioned into 20 μm thick slices using cryostat (Leica CM1860 UV). The slides were post fixed with 2% PFA for 10 min and rinsed with PBS containing 0.01% Triton X-100. The slices were then incubated for 10 min with PBS containing 0.20% Triton X-100 to improve penetration of the antibodies. The sections were blocked with 5% horse serum for 30 min, followed by incubation with vWF antibody (Santa Cruz Biotechnology, Inc.) at 4°C overnight. After PBS rinse containing 0.01% Triton X-100, the secondary antibody, donkey anti-goat IgG was added and incubated for 45 min at room temperature. The slides were mounted with VECTASHIELD® mounting medium with DAPI (Vector Laboratories, Inc.) to stain the cell nuclei. Images were taken with a Carl Zeiss microscope.
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9

Histological Preparation and Visualization

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After all experiments were completed, rats were euthanized with isoflurane, and transcardially perfused with saline (0.9%) followed by paraformaldehyde solution (4%) and formalin-sucrose solution (30%). Brains were removed and stored in formalin-sucrose for at least 48 h to allow fixation and to prepare for frozen sectioning. Sectioning was conducted in a microtome-cryostat (Leica CM1860 UV, Germany) at 80 μm thickness, and slices were mounted on clear glass slides. Sections were then stained with thionin and digitally captured, and the locations of the recording and stimulating tips were established according to the rat brain atlas of Paxinos and Watson (2007) . All animals had stimulating tips confirmed to be within the borders of the target region (Figure 2).
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10

Cryosectioning and Quadriceps Analysis

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Cryosection of quadriceps muscles were obtained using the cryostat (Leica CM1860-UV) and were used in all histomorphological studies and analyzed using optical light and/or fluorescence microscope. The quantification was obtained using the Image-Pro Express software (Media Cybernetic, Silver Spring, MD, United States) and the results were express as mean ± SD.
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