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Itaq universal sybr green supermix

Manufactured by Qiagen
Sourced in Germany, United States

ITaq Universal SYBR Green Supermix is a ready-to-use PCR master mix designed for real-time quantitative PCR (qPCR) applications. It contains all the necessary components, including a hot-start DNA polymerase, SYBR Green I dye, and optimized buffer system, to enable efficient and sensitive detection of target DNA sequences.

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4 protocols using itaq universal sybr green supermix

1

Quantitative PCR Protocol for Gene Expression

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For quantitative PCR, the total RNA, extracted from cells using the PureLink RNA Mini Kit (Invitrogen), was retrotranscribed (Thermo Fischer, RevertAid Reverse Transcriptase) and the cDNA used as template for each qPCR reaction in a 15μL reaction volume. iTaq Universal SYBR Green Supermix was used with the Qiagen Rotor-Gene System. To eliminate the contamination from genomic DNA, the RNeasy Plus Mini Kit (Qiagen) was used to purify the total RNA used for the RNA Sequencing. Oligos are reported in Table S8.
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2

Quantitative PCR Analysis of Interferon Signaling

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qPCR experiments were performed using iTaq™ Universal SYBR® Green Supermix (Qiagen, Hilden, Germany) as per the manufacturer’s instructions. Primers against IFNα (37 (link)) (Eurofins, Munich, Germany, custom DNA oligo forward: TCC ATG AGV TGA TBC AGC AGA, reverse: ATT TCT GCT CTG ACA ACC TCC C), IFNβ (Eurofins, Munich, Germany, custom DNA oligo forward: AAACTCATGAGCAGTGCA, reverse: AGGAGATCTTCAGTTTCGGAGG), IFNγ (Biorad, Munich, Germany, unique assay ID: qHsaCID0017614), IL-6 (Qiagen, Hilden, Germany Cat. 353458620), and OAS-2 (Qiagen, Hilden, Germany, Cat. 10025636) 96 h after IR were used. Comparative quantification method, ΔΔCt, was used to analyze relative gene expression patterns. The Ct values of a housekeeping gene, TBP1 (Qiagen, Hilden, Germany, Cat: QT00000721), were subtracted from those of target genes, resulting in ΔCt values. The ΔCt values for sham-irradiated samples were subtracted from those of irradiated samples, which provided a ΔΔCt value. Relative fold-change (n-fold) was calculated as 2-ΔΔCt, and averaged over four replicates to calculate the average n-fold change. A paired Student’s T-test was conducted using ΔCt values for sham- and 6 Gy irradiated samples.
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3

Adiponectin and PPAR-γ Expression Analysis

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Total RNA was extracted from cells on the 11th day of the differentiation protocol, using TRItidy-G reagent. The concentration and purity (absorbance ratio 260/280) of the extracted RNA were measured with a NanoDrop™ 2000c spectrophotometer (Thermo Fisher Scientific, United States). Synthesis of cDNA was performed with the iScript cDNA synthesis kit according to manufacturer instructions. RT-PCR was run on Rotor Gene Q (Qiagen) using the iTaq Universal SYBR Green Supermix and appropriate reagents (Qiagen, United States).
Customized primers were used from Qiagen for adiponectin (Mm_Adipoq_1_SG, NM_009605, Q01048047), GAPDH (Mm Gapdh_3_SG, QT01658692) and mPPAR-γ forward 5′-GTC​AGC​GAC​TGG​GAC​TTT​TC-3′ and reverse 5′-CGA​GGA​CAT​CCA​AGA​CAA​CC-3’.
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4

Fibroblast Characterization in Pulmonary Fibrosis

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Deidentified HPLFs, which were isolated from patients with IPF and from non‐disease control (NDC) patients, were provided through the University of Nebraska Medical Center lung tissue biobank with prior approval from the UNMC IRB. All HPLFs were cultured in DMEM with 10% FBS, 1% amphotericin B, 1% l‐glutamine, penicillin (100 U mL−1), and streptomycin (100 µg mL−1) at 37 °C in a humidified chamber with 5% CO2. MPLFs were isolated from the lungs of mice with BLM‐induced pulmonary fibrosis as described before[12b] and cultured at 37 °C with 5% CO2 in high‐glucose DMEM with 10% FBS and Pen‐Strep (100 U mL−1, 100 µg mL−1).
CXCR4, STAT3, col1a1, and col1a2 mRNA levels in the HPLFs and MPLFs were measured by RT‐PCR. Cells were homogenized with TRIzol reagent to isolate total RNA following the protocol. Then the total RNA was converted into cDNA via a High‐Capacity cDNA Transcription kit. The PCR reaction was run on the Rotor‐Gene Q (QIAGEN) using iTaq Universal SYBR Green Supermix.
Deidentified human lung parenchyma slides from NDC and IPF patients were provided by the University of Nebraska Medical Center Lung Transplant Biobank, and the slides were sectioned and analyzed with H&E and Masson's trichrome staining. Immunofluorescence dual‐staining for STAT3 and p‐STAT3, collagen‐1, and α‐SMA (smooth muscle actin) was performed, and slides observed using a confocal microscope.
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