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7 protocols using zf 0312

1

Immunofluorescence Analysis of TMEFF1 and ST14 in Ovarian Cancer

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The ovarian cancer cell lines CAOV3 were selected to make cell slides. ST14 and TMEFF1 double-labeling immunofluorescence was performed on cells and different ovarian tissue sections. The tissue sections and cells were incubated with primary antibodies against TMEFF1 (Santa Cruz, mouse, 1:50, catalog number 393,457) and anti-ST14 (Proteintech, rabbit, catalog number 27176-1-AP) at the same time as previously described [21 (link), 22 (link)]. The primary antibody was replaced with rabbit or mouse IgG (Bioss, China, catalog number bs0296P, bs0295P) as a negative control (Figure S1). The working concentrations of fluorescein isothiocyanate and tetraethyl rhodamine isothiocyanate (ZSBIO, China, catalog number ZF0312, ZF0312) were 1:50. Samples were then incubated for 1 h at room temperature. The nucleus was counterstained with 4′,6-diamidino-2-phenylindole (DAPI) (Abcam, catalog number ab104139), and images were captured with a confocal microscope.
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2

Comprehensive Antibody Validation Workflow

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Antibodies used and the sources are as follows: NFIB (ab186738, 1:1000 for WB), ORC1 (ab85830, 1:1000 for WB), CDC6 (ab188423, 1:1000 for WB), CDT1 (ab70829, 1:1000 for WB), MCM5 (ab76023, 1:1000 for WB), MCM6 (ab201683, 1:1000 for WB), MCM7 (ab52489, 1:1000 for WB), PCNA (ab29, 1:2000 for WB), H3 (ab1791, 1:2000 for WB) and BrdU (anti-CldU, ab6326) from Abcam; MCM2 (3619, 1:1000 for WB) from Cell Signaling Technology; ΟRC2 (sc-32734, 1:500 for WB), Geminin (sc-74456, 1:1000 for WB), POLD1 (sc-17776, 1:1000 for WB) and β-actin (sc-47778, 1:2000 for WB) from Santa Cruz Biotechnology; MCM4 (13043-1-AP, 1:1000 for WB), Cyclin E1 (11554-1-AP, 1:1000 for WB) and MCM3 (A1060, 1:1000 for WB) from Abclonal; NFIB (A303-566A, for CUT&Tag) and ORC1 (A301-892A, for CUT&Tag) from Bethyl Laboratories; c-myc-Tag (B1022, 1:2000 for WB), HA-Tag (B1021, 1:2000 for WB) and GAPDH (B1034, 1:2000 for WB) from Biodragon. FITC or TRITC-conjugated secondary antibodies (ZF-0311, ZF-0312, ZF-0316, ZF-0313, 1:100 for IF) from ZSGB-BIO.
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3

Nuclear Localization of ATF4 and CHOP

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The nuclear compartmentalization of ATF4 and CHOP was detected using immunofluorescence. After treating with 10 μM HA15 for 24 h, cells were fixed with 4% paraformaldehyde, then stained with a primary antibody ATF4 (60035, 1:200, Protein tech, Wuhan, China) or CHOP (15204, 1:200, Protein tech, Wuhan, China) overnight at 4°C. The next day, a FITC-tagged secondary antibody (ZF0311 or ZF0312, 1:1000, ZSGB-BIO, Beijing, China) and DAPI (C1002, Beyotime, Shanghai, China), were added. All images were captured using a Leica Application Suite X (LAS X) system on a Leica microscope (Leica TCS SP8, Wetzlar, Germany).
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Immunofluorescence Analysis of Endothelial Markers

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The HUVECs were seeded into 24-well plates at a density of ~104 cells per well and cultured for two days in ECM. Next, the cells were washed and fixed in 4% paraformaldehyde at 4°C for 15 min, washed with 1× PBS, blocked with 5% bovine serum albumin for 30 min and then incubated with the primary antibody at room temperature for 60 min. The expression of CD31, CD146, and GRP-78 was detected using monoclonal rabbit anti-human antibodies (dilution, 1:100; ab180175, ab75769 and ab108615, respectively; Abcam, Cambridge, UK) CD105 was detected using a monoclonal mouse anti-human antibody (dilution, 1:100; ab11414, Abcam). The negative control samples were concurrently incubated with 1× PBS. The secondary antibodies were fluorescein isothiocyanate-conjugated goat anti-rabbit and goat anti-mouse (dilution, 1:50; ZF-0311 and ZF-0312, respectively; ZSGB-BIO, Beijing, China). The nuclei were stained using DAPI (dilution, 1:1,000). The samples were viewed under an Olympus BX51 fluorescence microscope (Olympus, Tokyo, Japan) and analyzed using Image-Pro Plus 6.0 software (IPP 6.0; Media Cybernetics Inc., Rockville, MD, USA).
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5

Investigating Cre Recombinase Expression in Lcn9-Cre Mice

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To investigate the spatial distribution of active Cre recombinase, tdTomato signals in various tissues from 5-month-old Lcn9-Cre; Rosa26tdTomato mice were examined with a fluorescence stereomicroscope (M165; Leica). To determine changes over time, tdTomato signals in Lcn9-Cre; Rosa26tdTomato mice of different ages were detected.
To visualize the precise distribution of active Cre recombinase and track the cell types with positive signals, epididymal samples isolated from the heterozygous Lcn9-Cre; Rosa26tdTomato males were embedded in Tissue-Tek OCT (4583; Sakura). Six-μm thick frozen sections were washed with phosphate-buffered saline (PBS), blocked with 10% goat serum and incubated with primary antibodies overnight at 4°C. Immunofluorescence signals were screened after FITC-conjugated secondary antibody incubation and counterstaining with DAPI. Primary antibodies included cytokeratin 5 (Krt5) (ab52635; rabbit; Abcam; 1:200) [36 (link)] for basal cells, α-SMA (BM0002; mouse; Boster-bio; 1:200) for smooth muscle cells, and vacuolar H+-ATPase (V-ATPase) (ab200839; rabbit; Abcam; 1:200) [37 (link)] for narrow cells and clear cells. FITC-conjugated goat anti-mouse IgG (ZF-0312; ZSGB-bio; 1:100) and goat anti-rabbit IgG (ZF-0311; ZSGB-bio; 1:100) were used as secondary antibodies. Fluorescent images were captured with a confocal microscope (LSM900; ZEISS).
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6

PSMA Immunofluorescence Staining of 22Rv1 Tumors

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After IVIS imaging, 22Rv1 tumors were dissected and embedded in an optimal cutting temperature compound (OCT). Then the tumor tissues were cut into 20 μm thick slides and fixed with acetone at 4 °C for 20 min. After being blocked by BSA at room temperature for 1 h, the slides were incubated with a primary antibody against PSMA (ab19071; clone YPSMA-1, Abcam, Cambridge, UK; 1:300 dilution) at 4 °C overnight, and then stained with a FITC-labeled secondary antibody (ZF-0312; ZSGB-Bio, Beijing, China; 1:150 dilution) at room temperature for 1 h. Finally, DAPI was used for counterstaining. Vectra Polaris was used to scan the stained slides.
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7

Immunofluorescence Staining of PSMA

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A step-by-step protocol of immunofluorescence staining can be found at Protocol Exchange57 . Fresh resected specimens were embedded in optimal cutting temperature compound (OCT) and stored at −80 °C until for immunofluorescence. The embedded specimens were cut into 7 μm-thick slides and fixed with cold acetone for 20 min. After being blocked by BSA for 1 h, the slides were incubated with a primary antibody against PSMA (ab19071; Abcam, Cambridge, UK; 1:1000 dilution) at 4 °C overnight, and then stained with FITC-labeled secondary antibody (ZF-0312; ZSGB-Bio, Beijing, China; 1:100 dilution) at room temperature for 1 h. Finally, Hochest 33342 was used to stain nuclei and a 10 μM ODAP-490 solution was applied before the slides were sealed. The FluoView1000 confocal microscope (Olympus, Japan) was used to scan the stained slides.
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