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Srebp1

Manufactured by Novus Biologicals
Sourced in United States

SREBP1 is a transcription factor that regulates the expression of genes involved in lipid and cholesterol metabolism. It is a member of the sterol regulatory element-binding protein (SREBP) family of proteins. SREBP1 plays a critical role in the cellular response to changes in sterol levels, promoting the expression of genes necessary for the synthesis and uptake of lipids and cholesterol.

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12 protocols using srebp1

1

Western Blot Analysis of Adipogenic Proteins

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Protein was extracted in RIPA Lysis buffer (Invitrogen) together with a protease and phosphatase inhibitor cocktail (Invitrogen) and quantified with a Pierce BCA Protein Assay kit. Extracted protein was mixed with NuPAGE lithium dodecyl sulfate sample buffer (Invitrogen) and reducing agent, heated for 10 min at 85°C, and separated in a precast NuPAGE 4%–12% Bis-Tris polyacrylamide gel (Invitrogen) by SDS-PAGE electrophoresis. Separated proteins were transferred to Amersham Hybond PVDF membranes (GE Healthcare Life Sciences) at 100 V for 2 h. Following transfer, membranes were washed and blocked for 1 h and then probed with primary antibodies preincubated in the blocking agent. Primary antibodies used were: SREBP1 (Novus Biologicals; 1:500), FABP4 (Cell Signaling; 1:400), Adiponectin (Abcam; 1:1,000), C/EBPβ (Cell Signaling; 1:500), and C/EBPα (Cell Signaling; 1:500). After washing and incubation with the secondary antibody, immunoreactivity was visualized by chemiluminescence and densitometry performed with an iBright CL1500 Imaging system (Applied Biosystems).
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2

Western Blot Analysis of Signaling Pathways

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Proteins were separated by 10% SDS-PAGE, and transferred onto polyvinylidene fluoride membrane (Bio-Rad Laboratories, CA) [28 ]. After blocking for 2 h at room temperature, the membranes were incubated overnight at 4°C with primary antibodies against iNOS, IL-1β, COX-2, IKKα, IKKβ, p-IKKα/β, IκBα, p-IκBα, NF-κB p65, p-NF-κB p65, p38, p-p38, ERK, p-ERK, JNK, p-JNK, AKT, p-AKT, mTOR, p-mTOR, PPARγ, FAS, AMPKα, p-AMPKα, FoxO1, and p-FoxO1 (Cell Signaling Technology, USA), SREBP1 (Novus Biologicals, Canada) and β-actin (Santa Cruz Biotechnology, USA) which were diluted using manufacturers’ recommendations [25 ,29 ]. The membranes were then washed in 1× TBST and incubated with the appropriate secondary antibody HRP-conjugated (1:5000) at room temperature for 1 h. Protein bands were visualized using the Sensi-Q 2000 (Lugen, South Korea). The intensity of the bands was analyzed using ImageJ and normalized against β-actin [30 ].
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3

Liver Protein Analysis by Western Blot

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Liver proteins were extracted using radioimmunoprecipitation buffer (Cell Signaling Technology, Beverly, MA, USA). Total protein containing 40 μg was separated on 10% sodium dodecyl sulfate polyacrylamide gels and transferred to polyvinylidene fluoride membranes (Bio-Rad, CA, USA). After blocking, the primary antibodies employed were: β-actin (Biovision, Mountain View, USA), adenosine monophosphate (AMP)-activated protein kinase α [(AMPK) Cell Signaling Technology], phosphor-AMPK (Thr172) [(p-AMPK) Cell Signaling Technology], sterol regulatory element binding protein 1 [(SREBP1) Novus Biologicals, Littleton, CO, USA] and sterol regulatory element binding protein 2 [(SREBP2) Proteintech, Manchester, UK]. The membranes were incubated overnight at 4°C with primary antibodies, followed by incubation with horseradish peroxidase-linked secondary antibodies for 1 h at room temperature. The blots were incubated with appropriate horseradish peroxidase-linked secondary antibodies and then detected by enhanced chemiluminescence (Western Lightning ECL Pro; PerkinElmer, Waltham, MA, USA). Signal intensities were quantitated using the Quantity One Software (BioRad, Hercules, CA, USA).
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4

Western Blot Analysis of Lipid Metabolism Proteins

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The samples were lysed using radioimmunoprecipitation assay buffer containing protease inhibitors (Sigma-Aldrich, St. Louis, MO, USA). Protein concentrations were determined using bicinchoninic acid protein assay (G-Biosciences, Maryland Heights, MO, USA). Thirty µg of protein lysates were separated using sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transfer onto polyvinylidene fluoride membrane (Millipore, Burlington, MA, USA). The membranes were blocked at room temperature for one hour using TBS-T (10 mM Tris, 150 mM NaCl, and 0.05% Tween 20, (pH 7.6)) containing 10% skimmed milk, then probed with 1:1000 primary antibodies, such as FAS (Abcam, Cambridge, UK), ACC (Cell signaling, Danvers, MA, USA), SREBP1 (Novus, Centennial, CO, USA), ACOX1, CPT2 (Affinity Biosciences, Pottstown, PA, USA), PPARα (GeneTex, Alton Pkwy Irvine, CA, USA), HMGCR (Abcam, Cambridge, UK) and actin (Abnova, Taipei, Taiwan) at 4 °C overnight. Blots were then washed with TBS-T and incubated with a 1:5000 dilution of horseradish peroxidase-conjugated secondary antibodies (Abcam, Cambridge, UK) at room temperature for one hour. Protein bands were visualized using a chemiluminescence horseradish peroxidase substrate (Millipore, Burlington, MA, USA), and the relative signal intensity was quantified using ImageJ software.
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5

Characterization of Caveolae Proteins

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CAVIN1 (catalog no. HPA049838) antibody was purchased from Millipore Sigma. CAV1 (catalog no. ab2910), SV40 T antigen (catalog no. ab16879), GAPDH (catalog no. ab8245), and alpha tubulin (catalog no. ab7291) antibodies were from Abcam. SREBP1 (catalog no. NB600-582) antibody was from Novus Biologicals and FASN (catalog no. 3180) antibody was from Cell Signaling Technology.
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6

Protein Expression Analysis by Western Blot

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Cells were washed with cold PBS and homogenized in lysis buffer containing protease inhibitors (keyGEN, Nanjing, China) on ice. After centrifugation, the supernatant containing protein was collected. Total protein and 5 × SDS loading buffer were mixed and boiled at 100 °C for 5 min. Samples were separated by electrophoresis on 10% SDS-polyacrylamide gel and transferred onto polyvinylidene fluoride membranes, after which the membranes were blocked for 1 h at room temperature with 5% skim milk supplemented with 0.1% Tween 20 (TBST). Each membrane was then first incubated overnight with a primary antibody at 4 °C and then with a secondary antibody for 60 min at room temperature. Immunoreactive bands were visualized using a chemiluminescence (ECL) detection system or LI-COR Odyssey infrared imaging system. Primary antibodies are listed below: PITPNC1 (Sigma, Saint Louis, MO, USA), CPT1B, p-AKT (Ser473), MMP9, Cleaved Caspase 3 (Cell Signaling Technology, Danvers, MA, USA), SREBP1 (Novus Biological), CD36, BCL2, BAX, E-cadherin, Vimentin, PPARγ, PPARα/β, Ki67 (Abcam, Cambridge, MA, USA), Histone H3, β-actin (Proteintech, Chicago, USA).
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7

Western Blotting Quantitative Analysis

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Western blotting was carried out as described previously (27 ). Both αTubulin and Ponceau were used as loading controls. All quantitative data were calculated using Ponceau control. αTubulin is presented as a control in representative images. The following primary antibodies used in this study were obtained from Cell Signaling Technology: PPAR-γ (CAT#: 2443), SCD1 (CAT#: 2438), FASN (CAT#: 3180S), ACC (CAT#: 3662), phospho-ACC Ser-79 (Cat#: 3661), ATGL (CAT#: 2439), phospho-HSL Ser-660 (CAT#: 4126), phospho-HSL Ser-563 (CAT#: 4139), phospho-HSL Ser-565 (CAT#: 4137), HSL (CAT#: 4107), AKT (CAT#: 9272), phospho-AKT Ser-473 (CAT#: 9271), and phospho-AKT Thr-308 (CAT#: 9275). The primary antibodies obtained from Abcam were DGAT2 (CAT#: 237613) and αTubulin (CAT#: ab7291). Other primary antibodies include SREBP1 (CAT#: 2215, Novus Biologicals) and PEPCK1 (CAT#: 10004943, Cayman Chemical). The secondary antibodies used were Goat Anti-Rabbit IgG (H + L)-HRP conjugate (CAT#: 1706515, Bio-Rad Laboratories), and Goat Anti-Mouse IgG (H + L)-HRP conjugate (CAT#: 1706516, Bio-Rad Laboratories).
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8

WGA Pull-down for O-GlcNAc and SREBP-1

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Cells were lysed with NP-40 lysis buffer. For the WGA pulldown assay, 1 mg cell lysate was incubated with WGA-agarose beads for 1 hr at 4°C and the precipitated proteins analyzed via western blot. Proteins (20-40 μg each) were separated via SDS-PAGE and subjected to Western blot analysis using antibodies against anti-O-GlcNAc CTD110.6 (Covance, Berkeley, CA, USA), and SREBP-1 (Novus Biologicals, Denver, CO, USA).
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9

Western Blot Protein Analysis Protocol

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Western blot assays were performed using whole liver lysates, nuclear extracts, or plasma lipoprotein fractions separated by fast protein liquid chromatography (FPLC) as described previously 36 (link)–38 (link). FOXA3 antibody was purchased from Santa Cruz (Cat # SC-5361). PON1 and tubulin antibodies were purchased from Abcam (Cat # ab126597 and ab4074, respectively). ApoA-I antibody was purchased from Meridian Life Sciences (Cat # K23001R). SAA1 antibody was purchased from R & D Systems (Cat # AF2948). SREBP1 (Cat # NB600–582) and beta-actin (Cat # NB600–501) antibodies were purchased from Novus. CD36 antibody was purchased from Thermo Fisher (Cat # PA116813). Histone antibody was purchased from Cell Signaling (Cat # 9671). All the Western blot assays have been repeated once.
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10

Protein Expression Analysis in Mouse Tissues

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Mouse tissues were homogenized with a glass grinder in ice-cold RIPA buffer with protease and phosphatase inhibitors (GenDepot, Barker, TX). Cleared lysates were diluted to 4 µg/µl and 15–30 µg of protein was resolved on a 7.5–10% SDS-PAGE. For immunoblotting, the following primary antibodies and dilutions were used: rabbit antibodies total Akt (1:1000, #4691, Cell Signaling, Danvers, MA), pPKCζ T410 (1:1000, # 2060, Cell Signaling), pPKCβII S660 (1:1000, #9371, Cell Signaling), FAS (1:1000, #3180, Cell Signaling), HK2 (1:1000, #2867, Cell Signaling), PTEN (1:1000, #9188, Cell Signaling), primary mouse antibodies pAkt S473 (1:1000, #4051, Cell Signaling), β-tubulin (1:5000, #05–661, Millipore), SREBP1 (1:1000, NB #600-582, Novus Biologicals, Littleton, CO), CD68 (1:800, #ab 125212, AbCam, Cambridge, MA), and primary sheep antibody PKCε (1:2000, AF5134, R&D Systems, Minneapolis, MN). The following secondary antibodies were used: rabbit IgG (1:2000, W4011, Promega, Madison, WI), mouse IgG (1:2000, W4021, Promega), and sheep IgG (1:1000, HAF016, R&D systems). The signal was captured using an ImageQuant LAS 500 imager and analyzed by ImageQuant TL software (GE Healthcare, Chicago, IL).
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