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20 protocols using ab6759

1

SARS-CoV-2 Antibody Detection by ELISA

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Antigen-specific serological antibodies against SARS-CoV-2 were determined by enzyme-linked immunosorbent assay (ELISA) [20 (link),21 (link)]. Briefly, 96-well plates were coated with 500 ng/mL of each recombinant viral antigen overnight. The plates were incubated with serum samples at a dilution of 1:200, followed by incubation with either anti-human IgG conjugated with HRP (ab6759, Abcam, Cambridge, England) or anti-human IgA conjugated with HRP (ab97215, Abcam, Cambridge, England). Subsequently, the plates were incubated with TMB substrate for 1 h and the reaction stopped with 1M H2SO4. Optical density (OD) value at 450 nm was measured. The cut-off value was determined as the average of OD values plus 2 standard deviations (SD) from 45 archived healthy individuals from the year of 2019 as the unexposed donors. Antibody endpoint titre was determined by the highest dilution of serum which gives an OD value higher than cut-off value of the healthy control group at the same dilution.
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2

Immunofluorescent Staining of γ-H2AX

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Immunofluorescent staining was performed in compliance with the standard protocols. Briefly, the cells were fixed with 4% paraformaldehyde, permeated using 0.2% Triton X-100, and blocked with 5% bovine serum albumin at room temperature for 1 h. Next, the cells were incubated with rabbit anti-human γ-H2AX antibody (dilution ratio of 1:250, ab81299, Abcam Inc., Cambridge, MA, USA) overnight at 4°C, cultured with fluorescent staining-coupled secondary antibody (dilution ratio of 1:1000, ab6759, Abcam) for 1 h, followed by staining with 4ʹ, 6-diamidino-2-phenylindole. Finally, the cells were photographed and observed under a Zeiss microscope (Zeiss Inc, AG, Oberkochen, Germany).
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3

Miniaturized Anti-Scedosporium/Lomentospora IgG Assay

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Detection strips were used as anti-Scedosporium/Lomentospora IgG capture surfaces in a miniaturized immunoassay, following the detailed procedure shown in Figure 2. Briefly, a plastic backing containing one pre-blocked detection strip (one test) was first washed by dipping it in PBS containing 0.05% (v/v) Tween 20 (PBST), and then immersed in the serum sample diluted 1:300 in blocking solution for 3 min. After dipping and washing in PBST to avoid the nonspecific binding, the strip was soaked for 3 min in detection dolution (premixed HRP-labelled Goat Anti-Rabbit IgG [ab6721; Abcam, Cambridge, UK] 1:800 and HRP-labelled Rabbit Anti-Human IgG [ab6759; Abcam, Cambridge, UK] 1:800 in PBST). Final dipping washings preceded and incubation of 3 min in a 3,3′,5,5′ Tetramethylbenzidine (TMB) liquid substrate system followed (T0565; Sigma Aldrich). Visual naked-eye detection of a blue dot on both test lines (T1 and T2) and the control (C) means a positive result (Figure 2).
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4

Quantitative Protein Analysis in Skin Cells

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Total proteins in human cSCC cell lines (A431 and SCL-1 cells) and human normal skin HaCaT cells were extracted by RIPA lysate, and the concentrations of the proteins were calculated by BCA protein concentration determination kit. Protein samples were separated by electrophoresis before transferring to PVDF membrane. The membrane was incubated in 5% skim milk at indoor temperature for 2 h, followed by incubation with primary antibodies at 4°C overnight. Then, the membrane was incubated with HRP-coupled secondary antibody (ab6759, Abcam) for 2 h at room temperature. ECL was developed and exposed in gel imaging system. The gray value of band was measured by Image-Pro Plus 6.0 software with GAPDH as reference. The relative expression level of the target band was obtained by the gray ratio with the internal reference.
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5

Western Blot Analysis of RIG-I Protein

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Cells were frozen and lysed in lysis buffer (150 mM NaCl, 50 mM Tris-HCI, 1% Triton X-100 and 0.1% SDS) with a Protease Inhibitor Cocktail (cat. no. S8820; Sigma-Aldrich; Merck KGaA, Darmstadt, Germany) and a Phosphatase Inhibitor (cat. no. P0044; Sigma-Aldrich). For RIG-I analysis, a RIG-I antibody (ab132505) was used at a dilution of 1:1,000 and incubated at 4°C, overnight), followed by detection with a peroxidase-linked antibody (ab6759; both Abcam, Cambridge, UK) to rabbit antibody IgG of 1:2,000 dilution incubated at room temperature for 2 h. Proteins were detected using an Enhance Chemiluminesence Western Blotting Detection Reagent (GE Healthcare, Chicago, IL, USA). Images were analyzed using Image J (National Institutes of Health, Bethesda, MD, USA).
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6

Oxidative Damage Impact on CD44-HA Binding

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Finally, to determine whether oxidative damage to HA would affect its binding specifically with CD44 receptor (and not to alternative receptors binding HA in cells, for example), we used a human Fc chimera fusion protein (CD44-Fc). CAP-treated and untreated BSA- and HA-coated wells were blocked with 1% non-fat dry milk (Sigma) in PBS for 1 h at RT. 50 μL of human CD44-Fc chimera protein (3660-cd-050, R&D Systems) were added to each well at 10 μg/mL in PBST (phosphate buffer saline + 0.05% Tween-20, wash buffer). The plate was left to equilibrate at RT for 1 h. After washing, bound CD44-Fc was probed with 50 μL 1/130000 horseradish peroxidase (HRP)-conjugated anti-human Fc antibody (ab6759, Abcam) for 1 h at RT and in the dark. Plates were washed 5 times prior to developing the reaction. The colorimetric reaction of HRP was generated using the TMB (3,3′,5,5′-tetramethyl benzidine) substrate set (Biolegend) and quenched with the Stop Solution for TMB substrate (Biolegend). The OD was recorded at 450 nm and 590 nm using the iMark microplate reader (Biorad). The background signal at 590 nm was subtracted from the absorbance at 450 nm.
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7

Immunocytochemical Analysis of TWIST1 Expression

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Immunocytochemistry was performed with KYSE-30 and YM-1 cells expressing TWIST1 or GFP. The cultured cells were trypsinized and the cell suspension (106 cells per slide) was pelleted onto poly-L-lysine-coated glass coverslips using a cytospin centrifuge (Thermo Fisher Scientific). The coagulated cell mass was fixed using 4% paraformaldehyde (PFA) for 15 min. Cells were permeabilized with 0.01% Triton-X-100 in PBS for 10 min, followed by blocking with 1% bovine serum albumin (BSA) in PBS for 45 min at RT. Subsequently, cells were incubated with the following primary antibodies overnight at 4 °C: Anti-E-Cadherin (Abcam, ab15148, 1:1000 dilution), Anti-vimentin (Abcam, ab137321, 1:1000 dilution), Anti-β-catenin (Abcam, ab2365, 1:1000 dilution), Anti-Bcl2 (Abcam, ab59348, 1:1000 dilution), Anti-Bax (Abcam, ab53154, 1:1000 dilution). After washing, cells were incubated with HRP-conjugated rabbit anti-human IgG (Abcam, ab6759, 1:2000 dilution) for 30 min followed by incubation with the chromogen 3,3′-Diaminobenzidine (DAB) for 10 min at RT. Counterstaining was performed using Mayer's hematoxylin.
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8

Phage Display Western Blot Analysis

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For western blot (WB) analysis, recombinant phages displaying sequences of interest (ELEKAYKTTLSY (vector of cluster A), TLPMDTSPRAHW (vector of cluster B) and DYKDDDDK (FLAG tag)) at the N-terminus of the pIII of the M13 were generated with in vitro mutagenesis. For WB, 30 µg of protein lysate of 1 × 1013 phages with the following primary antibodies: anti-Flag (Sigma-Aldrich F3165; 1:3600), precleared human sera (dilution 1:750) and precleared human CSF (dilution 1:7,5) samples were incubated with secondary rabbit anti-mouse (Abcam, ab6728; dilution 1:10 000) or rabbit anti-human IgG antibodies (Abcam, ab6759; dilution 1:10 000). The ECL Femto kit (Amersham) was used for detection of target proteins.
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9

SARS-CoV-2 RBD Antibody Profiling

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ELISA was conducted to determine the antibodies and titres of serum binding antibodies to SARSCoV-2 RBD. Corning 96-well Stripwell Flat Bottom Microplates (Corning® 9102) were coated with 2.5 μg/mL SARS-CoV-2 RBD protein overnight at 4 °C. Plates were washed 5 times the next day with PBST (PBS containing 0.05% Tween-20) to remove unbound RBD protein and then blocked with 5% skim milk (Biotopped, D6340) in PBST for 2 h at 37 °C. For tilter, twofold serially diluted plasma were added to the wells and incubated for 1 h at 37 °C. For RBD specific antibodies, plasma was added to the wells after 1:500 dilution in 5% milk and incubated for 1 h at 37 °C. For IgG, Rb pAb to Hu IgG (HRP) antibody (abcam, ab6759) was used at a 1:10,000 dilution. For IgM, Rb pAb to Hu IgM (HRP) antibody (abcam, ab97210) was used at a 1:8000 dilution. For IgA, Rb pAb to Hu IgA (HRP) antibody (abcam, ab73901) was used at a 1:2000 dilution. For IgG subsets, Mouse anti-human IgG1-4 Fc secondary antibody (nitrogen, MH1715, MH1722, MH1732, MH1742) was used at a 1:200 dilution. Plates were washed 5 times with PBST. Plates were developed with TMB Two-component Substrate solution (solarbio, PR1210) for 5–30 min at room temperature. The reaction was stopped with ELISA stop solution. Plates were read on a Spectramax Plate Reader at 450 nm using Thermo Scientific Multiskan SkyHigh.
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10

Quantitative Western Blot Analysis of Rheumatoid Arthritis

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Proteins that separated from RA‐FLSs with RIPA lysis buffer (Shanghai Absin Biotechnology Co., Ltd.) were quantified with the application of a bicinchoninic acid (BCA) protein assay kit (Shanghai Yisheng Biotechnology Co., Ltd.). Then, the proteins were exposed to 8% SDS‐PAGE, after which were transferred to PVDF membranes. The membranes that sealed by 5% nonfat milk or 5% bovine serum albumin (BSA) were subjected to primary antibodies against SPTBN1 (ab124888; 1:1,000; Abcam), MMP2 (ab92536; 1:1,000; Abcam), MMP9 (ab76003; 1:1,000; Abcam), Bcl2 (ab32124; 1:1,000; Abcam), Bax (ab32503; 1:1,000; Abcam), cleaved caspase3 (ab32042; 1:500; Abcam), PIK3R2 (ab180967; 1:2,000; Abcam), p‐PI3K (ab278545; 1:1,000; Abcam), p‐AKT (ab38449; 1:1,000; Abcam), PI3K (ab140307; 1:1,000; Abcam), AKT (ab8805; 1:1,000; Abcam), or GAPDH (ab9485; 1:2500; Abcam) at 4°C overnight, after which was the probe with HRP‐labeled goat anti‐rabbit secondary antibody (ab6759; 1:5000; Abcam) at room temperature for 2 h. At last, ECL (Yeasen Biotech) and ImageJ (Version 146) were applied for the visualization and analysis of protein blots.
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