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6 protocols using ab191387

1

Immunohistochemical Analysis of Lung Cancer Markers

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Lung cancer tissues and paracancerous tissues were embedded by paraffin and sectioned into 4‐μm‐thick sections. Paraffin‐embedded tissue sections were deparaffinized and hydrated. Citric acid (pH 6) was used to extract antigens for 30 minutes at 97°C after which the antigens were treated with 3% H2O2. Then, the tissue sections were incubated with the anti‐rabbit antibodies against FXYD3 (ab205534, 1:400, Abcam), KDM3A (ab191387, 1:500, Abcam) and DCLK1 (ab109029, 1:500, Abcam) overnight at 4℃. Afterwards, the sections were incubated with the horseradish peroxidase (HRP)‐conjugated secondary antibody (Dako; Agilent Technologies, Inc) for 30 minutes. Following 10‐minute incubation with 3,3'‐diaminobenzidine tetrahydrochloride, the sections were re‐stained with haematoxylin for 2 minutes. Finally, the pathology results were obtained under a microscope.
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2

Chromatin Immunoprecipitation Assay

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Subsequent to 10 min 1% formaldehyde fixing, cells underwent two washes with phosphate buffer saline (PBS) encompassing protease inhibitors (1 mM benzenesulfonylfluoride, 1 μg/mL aprotinin and 1 μg/mL pepsin A), 10 min culture in lysis buffer (1% SDS, 10 mM ethylenediaminetetraacetic acid [EDTA], 50 mM Tris-HCl, pH = 8.1), and sonication. Following 10 min lysate centrifugation at 13,000 r/min, the supernatant was diluted by dilution buffer (0.01% SDS, 1% Triton X-100, 2 mM EDTA, 16.7 mM Tris-HCl pH = 8.1, 167 mM NaCl and protease inhibitors) and incubated with antibody to IgG, KDM2A (1:80, ab191387, Abcam), or H3K4 (1:100, ab8580, Abcam) at 4 °C. DNA fragments were collected and amplified by PCR with specific primers.
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3

Western Blot Analysis of Kdm2a in Oocytes

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For Western blot analysis, 150 oocytes from each group were used as previously described [56 (link)]. Briefly, the antibodies of anti-Kdm2a (Abcam, ab191387, 1:1000) and anti-ACTB (Abcam, ab26273, 1:1000) were incubated with the blotted PVDF membranes overnight at 4 °C. After washing, the blot was incubated with an HRP-conjugated anti-rabbit antibody (bs-40295G-HRP) for 2 h at RT. Thereafter, a chemiluminescence detection system (iBright CL100, Thermo, Carlsbad, CA, USA) was used for quantitating the immunoreactive bands. The relative levels of proteins were normalized to the expression of ACTB.
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4

Immunofluorescence analysis of histone modifications in oocytes

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Oocytes were fixed for 1 h in 4% formaldehyde in a phosphate buffered saline (PBS, pH 7.4) at room temperature (RT). After permeabilization with 0.2% Triton X-100 for 20 min, oocytes were incubated with primary antibodies diluted in blocking solution overnight at 4 °C, including Kdm2a (Abcam, ab191387, 1:500), H3K36me1 (Abcam, ab176920, 1:1000), H3K36me2 (Abcam, ab176921, 1:1000), and H3K36me3 (Abcam, ab9050, 1:1000). After three washes with PBS, oocytes were incubated with corresponding secondary antibody at RT for 30 min, and stained with propidium iodide (PI, 1 μg/mL in PBS) for 5 min. Labeled oocytes were mounted on slides and obtained images using a Zeiss LSM800 confocal microscope (Carl Zeiss, Germany) with the same parameters. The ZEN imaging and ImageJ software were used to analyze the images.
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5

Immunohistochemical Analysis of Cartilage Markers

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Clinical samples were collected and processed to isolate cartilage tissues, and the tissue sections were subjected to immunohistochemical detection of KDM2A-, E2F1-, and PTTG1-positive expression rates. Antigens were retrieved from tissue sections by boiling in sodium citrate buffer. Immunohistochemistry was carried out by incubating sections with primary antibodies rabbit anti-KDM2A (ab191387; Abcam, Cambridge, UK), E2F1 (ab218527; Abcam, Cambridge, UK), and PTTG1 (ab128040; Abcam, Cambridge, UK). Normal rabbit serum was employed as NC instead of primary antibody. Next, the sections were incubated with HRP-secondary antibody and then exposed to 3,3′-diaminobenzidine (DAB) reagent prior to microscopic observation. KDM2A, E2F1, and PTTG1 expression was positive with brownish-yellow particles in chondrocytes. Specimens were scored according to the intensity of the dye color and the number of positive cells.38 (link)
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6

Protein Expression Analysis Protocol

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Cells were collected by detachment with trypsin and then lysed in radio immunoprecipitation assay lysis buffer (Boster, Hubei, China), followed by estimation of protein concentration using a bicinchoninic acid quantification kit (Boster). Subsequent to separation using freshly-prepared 10% sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis, the protein was electro-transferred onto polyvinylidene fluoride membranes. The membrane underwent 5% bovine serum albumin (BSA) blocking and probing with primary antibodies (Abcam, Cambridge, UK) to KDM2A (ab191387, 1:1000), JAG1 (ab7771, 1:500) and GAPDH (ab181602, 1:500). Following incubation with secondary antibody goat anti-rabbit immunoglobulin G (IgG) (ab205719, 1:500, Abcam), immunoblots were visualized with enhanced chemiluminescence detection reagents (Millipore Corp., Bedford, MA, USA) and then captured under the Bio-Rad image system (Bio-Rad, Hercules, CA, USA). Gray values of target protein bands were quantified using Image J software, with GAPDH as a normalizer.
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