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6 protocols using coomassie brilliant blue r 250

1

Zymographic Analysis of Procathepsin K

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The zymography was performed using gels with 0.1% (w/v) Emdogain (Biora, AB Malmo, Sweden). Emdogain was dissolved in 1 mL/L acetic acid (Ruimeng, Jinan, China) to a concentration of 10 mg/mL. In brief, 3 μL(0.15 μg/μL) of Active human Procathepsin K protein fragment (ab157020, Abcam, Cambridge, USA) was mixed with 7 μL sterilized deionized water and then mixed with 2.5 μL of 5× SDS-sample buffer. Then electrophoresis was conducted with a Bio-RadMini-Protein system (Bio-Rad, Hercules CA, USA) with a constant voltage of 120 V at 4°C. After electrophoresis, in order to remove SDS, the gels were immersed in 2.5% (v/v) Triton X-100 for 1 hrs, washed twice in the incubation buffer (50 mM sodium acetate, 2.5 mM dithiothreitol (DTT), 2.5 mM EDTA, pH = 4.5), and then immersedin the incubation buffer at 37°C for 2, 6, 12, 24, 48 hrs, respectively. The gels were subsequently washed with water and stained in 45% methanol /10% acetic acid/water containing 0.25% Coomassie Brilliant Blue R-250 (MP Biomedicals, Shanghai, China).
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2

Clonogenic Assay for Cancer Cell Survival

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Two-dimensional (2D) clonogenic (or colony formation) assay is an in vitro cell survival test based on the ability of a single cell to grow into a colony by undergoing multiple divisions [33 (link)]. Viable cells were seeded to 6 wells plates (Ø35mm) at 2000 cells/well of MDA-MB-468, at 5000 cells/well of HCC70 and 7000 cells/well of BT-20, and allowed to attach to the well bottom overnight. Cells were treated then with 0.2 µM of berberine, and incubated for 10 days for MDA-MB-468 and for 15 days for both HCC70 and BT-20, time to allow colonies to form in the negative control DMSO (0.005%). The obtained colonies were washed with PBS (1X), fixed and stained with 0.05% of Coomassie® Brilliant Blue R-250 from MPBiomedicals (Aurora, Ohio, USA) solubilized in 50% of methanol, 10% Acetic acid and 40% of Milli-Q water. The colonies number of each line was then compared to DMSO control treated cells using ImageJ software. Experiments were carried out in triplicate and for at least three times.
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Reagents for SARS-CoV-2 Antibody Detection

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The following chemical reagents were used in this work: tris-hydroxymethylaminomethane (Tris, 111TRIS01KG) glycine (Q5778), dithiothreitol (020909), and Coomassie Brilliant Blue R-250 (821616) were from MP Biomedicals (Eschwege, Germany); KCl (1101–1.0), K2HPO4 (2981C270), KH2PO4 (1138B228), N,N,N’,N’-tetramethylethylenediamine (TEMED, L-0847–10,0), and sodium dodecyl sulfate (SDS, 0116B026) were purchased from Helicon (Moscow, Russia); acrylamide (DE790612.0500) and N,N’-methylenebisacrylamide (DE110269.0050) were from Dia-M (Moscow, Russia); Triton X-100 (Am-0694) and ammonium persulfate (PSA) were from Sigma (A3678St, Louis, MO, USA); protein molecular weight markers, PageRuler, 10–200 kDa (Thermo Fisher Scientific Baltics, Vilnius, Lithuania, 26630); hydrogen peroxide (H2O2) was from Sigma-Aldrich (St. Louis, MO, USA). An ELISA kit was used for the determination of the IgG subclass (A-8672, VECTOR-BEST, PO BOX 492, Novosibirsk, Russia). Two ELISA kits were used for the evaluation of the antibodies against the S-protein (5501 SARS-CoV-2-IgG-EIA-BEST VECTOR-BEST, PO BOX 492, Novosibirsk, Russia) and N-protein (5507 SARS-CoV-2-Ag-EIA-BEST VECTOR-BEST, PO BOX 492, Novosibirsk, Russia).
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4

Recombinant NcGRA6 Protein Expression

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Cloning of NcGRA6 gene and expression of recombinant proteins of N. caninum dense granule protein 6 fused with glutathione-S-transferase (NcGRA6 + GST) and glutathione-S-transferase (GST) were performed as previously described [21 (link)]. In brief, the PCR products digested with EcoRI and XhoI were inserted into the pGEX-4T1 plasmid vector (Amersham Pharmacia Biotech, Madison, CA, USA). Recombinant NcGRA6 was expressed as glutathione S-transferase (GST) fusion protein (NcGRA6+GST) in Escherichia coli BL21 (DE3) (New England BioLabs Inc., Ipswich, MA, USA). The purity and amount of the proteins were determined by running sample on sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) followed by staining with Coomassie Brilliant Blue R250 (MP Biomedicals Inc., Illkirch-Graffenstaden, France). The proteins were dialyzed in PBS and filtered with a 0.45-μm low-protein binding Supor membrane, and the endotoxin was removed using Acrodisc Units with Mustang E Membrane (Pall Life Sciences, Ann Arbor, MI, USA) for subsequent use for in vivo experiments. In addition, level of endotoxin was measured with limulus amebocyte lysate reagents (Seikagaku Inc., Tokyo, Japan), and no endotoxin was found in the tested protein lots.
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5

Recombinant Protein Expression Analysis

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Approximately equal amounts of each recombinant protein and bovine serum albumin (as a negative control in western blotting) were mixed with 5 × loading buffer, boiled for 10 min, and then loaded onto 12% SDS-PAGE. The gel was stained with Coomassie brilliant blue R250 (MP Biomedicals, Santa Ana, USA) or electrophoretically transferred to polyvinylidene difluoride membranes (Milipore, San Diego, CA, USA). The membranes were blocked with 5% skim milk for 2 h at room temperature and then incubated with anti-histidine monoclonal antibody (1:5000 dilution, Abcam, Cambridge, UK) or anti-ASFV swine serum (1:300 dilution, Diagnostic Products Center, LVRI, China) overnight at 4 °C. After washing five times with PBS containing 0.05% Tween-20 (PBST), the membranes were incubated with horseradish peroxidase (HRP)-conjugated goat anti-mouse antibody (1:5000 dilution, Abcam) or goat anti-pig antibody (1:5000 dilution, Abcam) for 1 h at room temperature. After being washed with PBST, the membranes were developed using enhanced chemiluminescence reagent (Thermo Fisher Scientific).
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6

Molecular Biology Technique Reagents

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Molecular-grade Tris, SDS, glycine, Coomassie brilliant blue R250, ethanol, and methanol were bought from MP Biomedicals, and polyvinylidene fluoride (PVDF) membranes from Millipore (MA, USA). Fmoc-amino acid trityl chloride resins, Fmoc-L-amino acid, coupling chemicals, and 2-(1H-benzotriazole-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate were bought from Chempep (Miami, FL). Na2EDTA, skim milk, FBS, MTT, NaCl, KHPO4, KCl, and NaHPO4 were bought from Himedia (India). The chemicals such as agarose, Trizma base, magnesium acetate, acetic acid, EDTA, ethidium bromide and 6× loading dye were purchased from Sigma-Aldrich. NexGen HM Protease inhibitor (BPOI001) was bought from Biopioneer (India). SRL Chemicals (India) supplied the reagents, such as N, N-dimethylformamide (DMF) and N,N-diisopropylethylamine (DIPEA). Polypropylene columns were supplied by Bio-Rad. Lipofectamine 2000 was purchased from Thermo Scientific. The LDHFSR-01 kit was procured from Meril Diagnostics. VEGF antibody (sc-365578), and VEGF siRNA (sc-29520) were purchased from Santacruz. GAPDH monoclonal antibody (10-10011) and alkaline phosphatase-conjugated goat anti-mouse immunoglobulin (Ig) G (11-302) were purchased from Abgenex. 18s rRNA primer and VEGF primer (Table S3) were custom synthesized from Integrated DNA Technology (IDT), USA.
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