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7 protocols using p27 sc 528

1

Western Blot Analysis of Key Proteins

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Equal amounts of proteins were separated by SDS-PAGE. After blocking the membrane with 5 % skim milk for 1 h at room temperature, the membranes were incubated with primary antibodies against NFAT (sc-271127), MyoD (sc-760), p-MARCKS (sc-101730), and p27 (sc-528; all Santa Cruz Biotechnology), LaminB2 (sab2702205; Thermo Fisher Scientific), and β-actin (A5316; Sigma-Aldrich Corp.) overnight at 4 °C. The membrane was washed and incubated for 1 h at room temperature with horseradish peroxidase-conjugated secondary antibodies. The bands were detected by an enhanced chemiluminescence (ECL) reagent (Santa Cruz Biotechnology). The band intensities were quantified using NIH Image J version 1.34e software.
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2

Lentiviral Knockdown of p27 in Cells

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Lentiviral vector GIPZ-p27shRNA (V3LHS_410220) targeting the 3′-UTR of p27 was purchased from Thermo Scientific. The shorthair pin sequences are as follows:
TGCTGTTGACAGTGAGCGCCACAATAACACT AAAATTTTATAGTGAAGCCACAGATGTATAAAATT TTAGTGTTATTGTGTTGCCTACTGCCTCGGA. P27 mutants were generated by site-directed mutagenesis and full length p27 mutants were subcloned into the retroviral pBABE-hyrgomycin.
Primary antibodies used for western blots were: p27 (sc-528; Santa Cruz Biotechnology), γ-tubulin (T6557; Sigma-Aldrich), Flag (F3165; Sigma-Aldrich), Akt (Cat#9272, Cell Signaling), phospho-Akt (Ser473) (Cat#9271, Cell Signaling). For flow cytometry, BrdU antibody (Cat#556028; BD Pharmingen) was used. For immunostaining, the primary antibodies included BrdU antibody (ab8152; Abcam), cleaved caspase 3 (Cat#9664, Cell Signaling), and p27 (119–2; generated in the lab). Alexa Fluor-488 or Alexa Fluor-647 conjugated goat anti-rabbit or goat anti-mouse (Invitrogen) were used as secondary antibodies for immunostaining. Lapatinib is from BioVision (Cat#1624–100).
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3

Western Blot Analysis of Signaling Proteins

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Cells were incubated with or without agents as indicated, and harvested. The cells were then re-suspended in lysis buffer (50 mM Tris-HCl, 1% SDS, 2 µg/mL leupeptin, 2 µg/mL aprotinin, 0.5 mM phenylmethylsulfonyl fluoride, and 0.1% 2-mercaptoethanol). The lysate was sonicated and centrifuged at 15,000 g for 20 min at 4°C, and the supernatant was collected. Equal amounts of lysate were analysed by SDS-PAGE and transferred to PVDF membranes (Millipore). Primary antibodies were obtained for the following proteins: MEK1/2 (#9122), phospho-MEK1/2 Ser217/221 (#9121), p44/42 MAPK (ERK1/2) (#9102), phospho-p44/42 MAPK (ERK1/2) Thr202/Tyr204 (#9101), phospho-RB Ser780 (#9307), phospho-RB Ser807/811 (#9308) (Cell Signaling Technology, Inc.), p27 (sc-528), cyclinE (sc-247), Raf-1 (CRAF) (sc-7267), Raf-B (BRAF) (sc-55522) (Santa Cruz Biotechnology, Inc.), β-actin (Sigma), RB (BD Bioscience), and cyclinD1 (K0062-3) (Medical and Biologic Laboratories). The blots were blocked in blocking buffer (5% skim milk/TBST) for 1 h at room temperature, and incubated with the appropriate primary antibody in blocking buffer for 1 h at room temperature. The blots were then washed and incubated with the appropriate horseradish peroxidase (HRP)-conjugated secondary antibody for 1 h, and signals were detected with the Immobilon Western Chemiluminescent HRP Substrate (Millipore).
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4

Evaluating Epithelial-Mesenchymal Transition

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Anti-GAPDH (sc-47724), p16INK4A (sc-468), p14ARF (sc-8613), p63 (sc-25268, RRID:AB_628092), laminin β1 (sc-33709), integrin β1 (sc-59827), cyclin B1 (sc-245, RRID:AB_627338), and p27 (sc-528, RRID:AB_632129) were purchased from Santa Cruz Biotechnologies (Dallas, TX, USA). Anti-p53 (OP43–100UG, RRID:AB_213402) was purchased from Oncogene, (Cambridge, MA, USA). Anti-Keratin 5 (#905503) and Keratin 18 (#628401) were purchased from BioLegend (San Diego, CA, USA). Anti-CK18 (#4548), phospho-RB (#9313S), and Anti-AR (#5153S) were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-Vimentin (ab92547) was from Abcam (Cambridge, MA, USA). Anti-E-Cadherin (610181, RRID:AB_397580) was from BD Biosciences (San Jose, CA, USA).
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5

Comprehensive Protein Expression Analysis

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Anti-GAPDH (sc-47724), p16INK4A (sc-468), p14ARF (sc-8613), p63 (sc-25268, RRID:AB_628092), laminin β1 (sc-33709), integrin β1 (sc-59827), cyclin B1 (sc-245, RRID:AB_627338), and p27 (sc-528, RRID:AB_632129) were purchased from Santa Cruz Biotechnology. Anti-p53 (OP43-100UG, RRID:AB_213402) was purchased from Oncogene. Anti-Keratin 5 (#905503) and Keratin 18 (#628401) were purchased from BioLegend. Anti-CK18 (#4548), phospho-RB (#9313S), and Anti-AR (#5153S) were purchased from Cell Signaling Technology. Anti-Vimentin (ab92547) was from Abcam. Anti-E-Cadherin (610181, RRID:AB_397580) was from BD Biosciences.
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6

Taspase1 Knockdown in Breast Cancer Cell Lines

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BT-474 and HCC1419 cell lines were obtained from American Type Culture Collection and cultivated for no more than 2 months after each frozen aliquot was thawed. Amphotropic retrovirus carrying Taspase1 specific knockdown hairpin was generated as described26 (link),29 (link). To assay cell proliferation, 1 × 105 cells were seeded onto each well of a 6-well plate and counted 4 days later. Cell cycle and cell death analyses were performed as described26 (link). For western blot, cells and tissues were lysed in standard RIPA buffer. The anti-Taspase1 rabbit polyclonal antibody is as described22 (link),26 (link). Antibodies for cyclin E2 (4132, Cell Signaling), cyclin A (C4710, Sigma), p21 (sc-397, Santa Cruz Biotechnology), p27(sc-528, Santa Cruz Biotechnology), cyclin D1(sc-450, Santa Cruz Biotechnology), p16(554079, BD Pharmingen), and ErbB2(OP-15, Calbiochem) were purchased from indicated companies. Antibodies were detected using the enhanced chemiluminescence method (Western Lightning, PerkinElmer). Immunoblot signals were acquired with the LAS-3000 Imaging system (FujiFilm) and were analyzed with ImageJ software.
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7

Vinorelbine and Everolimus Combination Therapy

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Vinorelbine (Navelbine®) (10 mg/mL) was obtained from Pierre Fabre Medicament (Boulogne, France) and was dissolved in PBS to a final concentration of 0.375 mg/mL before use. Everolimus (RAD001) was obtained from Novartis (Basel, Switzerland) and dissolved in a vehicle (30% Captisol® in water) to achieve the appropriate concentration for the treatments.
Antibodies against AKT (#9272), p70S6K (#9202), survivin (#2803), S6R (#2217), Rb (#9313), Cyclin B1 (#4138), eIF4E (#9742), Cdc25C (#4688), cleaved caspase 3 (#9661), cleaved caspase 7 (#9491), cleaved PARP (#5625), Cyclin D1 (#2978), Cdc2 (#9112), and α-Tubulin (#2144) and phosphorylation-specific antibodies against RB Ser807/811 (#9308), AKT Ser473 (#9271), mTOR Ser2448 (#5536), p70S6K Thr421/424 (#9204), S6R Ser235/236 (#4858), 4EBP1 Thr70 (#9455), Histone H3 Ser10 (#9701), Cyclin D1 Thr286 (#3300), Cdc25C Ser216 (#4901), Cdc2 Tyr15 (#9111), eIF4E Ser209 (#9741), and ERK1/2 Thr202/Tyr204 (#4370) were obtained from Cell Signaling Technology (Beverly, MA, USA). RKIP (#37-2100) was obtained from Invitrogen. p-Cdk2 Thr14/Tyr15 (sc-28435-R), ERK1/2 (sc-94), and p27 (sc-528) were obtained from Santa Cruz Biotechnology Inc. (Santa Cruz, CA, USA). Anti-mouse CD31 (#2502) antibody was purchased from BioLegend (San Diego, CA, USA).
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