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19 protocols using na2co3

1

Polyelectrolyte Complexes and Gold Nanorods

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Poly(sodium 4-styrenesulfonate) [PSS (MW ≈ 75,000, 18 wt% in water)] and poly(allylamine hydrochloride) [PAH (MW ≈ 15,000)], Figure S1, were obtained from Sigma-Aldrich (Steinheim, Germany). Trifluoroacetic acid (TFA) and sodium hydroxide (NaOH) used to control the pH were also purchased from Sigma-Aldrich. CaCl2 (purity ≥ 99.5%)] was obtained from Fisher Chemical (Waltham, MA, USA) and Na2CO3 was obtained from J. T. Baker (Philadelphia, PA, USA). TMPyP tetraiodide salt was purchased from Sigma-Aldrich. Gold nanorods (CTAB stabilized, 25 × 71 nm, product number A12-25-650-CTAB-DIH-25 lot RPD236AD) were purchased from Nanopartz Inc., Ltd. (Loveland, CO, USA). All the reagents were used as received. Polyelectrolyte solutions (3 mg/mL of PSS and 12 mg/mL of PAH, 0.5 M NaCl) were prepared in bi-distilled water, and the pH was adjusted to 6.5 for the PSS/PAH used in the PEC’s preparation. PSS solution (1.7 mg/mL) was used for nanorod functionalization. Glass microscope slides (0.13–0.17 mm thickness) were obtained from Normax, Marinha Grande, Portugal.
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2

Protein Quantification using Lowry Method

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The protein content in the samples was determined using the Lowry method. Briefly, the protein quantities in these samples were assessed using an 8-point standard curve of bovine serum albumin (Sigma, St. Louis, MO, USA), which was used as a reference standard. Samples were diluted and transferred to the microplate, 250 μL of the following solution: 2% Na2CO3 (JT Baker, Xalostoc, Edo. Mexico, Mexico), 0.4% NaOH (JT Baker, Xalostoc, Edo. Mexico, Mexico), 0.02% C4H4O6KNa·4H2O (Mallinckrodt, Staines, UK), and 0.01% CuSO4 (JT Baker, Xalostoc, Edo. Mexico, Mexico) was added to each well. The mixture was then allowed to incubate at room temperature for 10 min prior to the addition of 25 μL per well of 1.0 N Folin and Ciocalteu’s reagent (Sigma, St. Louis, MO, USA). Samples were mixed immediately and after 30 min, absorbance was measured at 660 nm [41 (link)].
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3

Quantification of Polyphenol Compounds

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HCl (hydrochloric acid), 2,6-DCFI (2,6-dichloroindophenol), FCR (Folin–Ciocalteu reagent), K2S2O8 (potassium persulfate), ethanol, and gallic acid were purchased from Panreac (Barcelona, Spain). Na2HPO4 (sodium hydrogen phosphate), KH2PO4 (potassium dihydrogen phosphate), and NaHCO3 (sodium hydrogen carbonate) were obtained from Scharlab (Barcelona, Spain). Na2CO3 (sodium carbonate), acetone, acetonitrile, and ascorbic acid were provided by VWR International (Lovaina, Belgium). Formic acid was purchased from Merck (Darmstadt, Germany). Acetic acid, hexane, and methanol were supplied by J.T. Baker (Deventer, The Netherlands). HPO3 (metaphosphoric acid), Trolox ((+/−)-6-hydroxy-2,5,7,8-tetramethylchromane-2-carboxylic acid), ABTS (2,2′-azino-bis(3-ethylbenzothiazoline-6-sulphonic acid)), AAPH (2,2′-azobis (2-methyl)propionamidine), fluoresceine, protocatechuic acid, (+)-catechin, caffeic acid, chlorogenic acid, p-coumaric acid, ferulic acid, trans-cinnamic acid, naringin, hesperetin, hesperidin, and apigenin were obtained from Sigma-Aldrich (St. Louis, USA). Rutin trihydrate and quercetin were obtained from HWI Analytik GmbH (Ruelzheim, Germany). Analytical grade chemicals and distilled water were used.
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4

Biotin-Affinity Purification of Protein Complexes

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Cells were lysed on ice in 550 µl (six-well plates) or 1 ml (10 cm dishes) of RIPA buffer (Boston Bioproducts) in presence of cOmplete, Mini, EDTA-free Protease Inhibitor Cocktail (Millipore Sigma) and PhosSTOP (Millipore Sigma) for 10 min. Lysates were cleared by centrifugation at 16,000 × g for 10 min at 4 °C. 10% of the lysed cells was set aside as input. set aside as input. Pull down and washes were performed as in ref. 27 (link). Briefly, lysates were mixed with Pierce Streptavidin Magnetic Beads (Thermo Fisher) at a ratio of 100 µl beads/4 million cells. Lysates were incubated with beads with constant rotation for one hour at room temperature and then overnight (O/N) at 4 °C. Beads were then applied to a magnet and subjected to the following washes: two times with 1 ml of RIPA, one time with 1 M 1 ml of KCl (Thermo Fisher), one time with 1 ml of 0.1 M Na2CO3 (VWR), one time with 1 ml of freshly prepared 2 M Urea (VWR) resuspended in 10 mM Tris-HCl pH 8.0 (Thermo Fisher) and two times with RIPA. Proteins were eluted from beads by adding 150 µl (six-well plates) or 500 µl (10 cm dish) of non-reducing Laemmli (Boston bioproducts) containing 20 mM DTT (Thermo Fisher) and 2 mM biotin (Cayman chemicals) and boiled for 20 min. Input was diluted with 2X sample buffer (Sigma). For mass spectrometry, beads were processed as follows.
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5

Isolation and Purification of Bioactive Tamanu Oil Compounds

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A batch of oil resin extract (157 g) from commercial tamanu oil (provided by “Laboratoire de Cosmétologie du Pacifique Sud” manufacture) from French Polynesia was first partitioned with EtOH (provided by Fisher chemical) and an aqueous alkaline solution of Na2CO3 (from VWR chemicals) (10%, v/v). Its organic fraction was washed with distilled water and then dried with MgSO4 (provided by VWR chemicals) to give a neutral fraction (53 g) after solvent evaporation. This fraction was submitted to flash liquid chromatography on an open column with a silica gel (240–300 mesh) using a stepwise gradient from cyclohexane (provided by VWR chemicals) to EtOAc (provided by VWR chemicals), yielding 12 fractions. Fractions having similar Rf values on silica gel TLC (cyclohexane-acetone, both provided by VWR chemicals, 60:40, v/v) were combined. Fractions 7, 9 and 11 were submitted to repeated preparative HPLC using a Varian Dynamax Si column (250 × 21.4 mm id, five μm with cyclohexane-EtOAc (10:90) in isocratic eluent conditions. This chromatographic purification network led to the isolation of new compounds tamanolides E1 and E2 as a mixture (two mg) besides standard known compounds namely, calophyllolide, inophyllums (C, D, E, P), calanolides (Gut 70 and A, 12-oxo-calanolide) and tamanolides (D, P).
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6

Ion Chromatography Nitrite and Nitrate Analysis

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Nitrate and nitrite reference material (1000 mg L1), certified for ion chromatography, were obtained from Sigma-Aldrich (Stenheim, Germany). Na2CO3 (>99.5%) was supplied by VWR International s.r.l. (Milan, Italy). Ultrapure water (18.2 MΩ-cm), produced using the Arium® mini essential UV system (Sartorius AG, Goettingen, Germany), was used for preparing both mobile phase samples and standard solutions. The calibration curves of nitrite and nitrate were obtained by injecting the following concentrations of both compounds: 0.01, 0.1, 1.0, 5.0 and 10.0 mg L1.
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7

Production of SAP Fiber from Spruce Pulp

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A spruce sulfite pulp with DP 590 from Domsjö fabriker AB, Domsjö/Sweden, N-methylmorpholine-N-oxide of BASF/Leverkusen/Germany as a 50 wt.% aqueous solution, and polyacrylate from Evonik/Essen/Germany were used to produce the SAP fiber. SAP is partly crosslinked with NaOH, containing 3.43 mmol COO/g (Titration) and 19.9% Na (ICP-OES). Glucose, AgNO3, NaCl, CuSO4·5H2O, and Na2CO3 were purchased from VWR International GmbH/Darmstadt/Germany as p.a. products.
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8

Pulping and Lignin Analysis Protocol

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Pulping: GVL (≥99 wt%), sulfuric acid (95–97.0 wt%), NaBH4, MgSO4*7H2O, NaHSO3, di(trimethylolpropane) (97%), diphenyl carbonate (99%), Xylose (≥99 wt%), activated charcoal (100 mesh particle size) were purchased from Sigma Aldrich. Ethanol (≥99.5 wt%) was purchased from Anora. Betula Pendula (Silver birch) wood chips were supplied by Stora Enso (Finland). The wood chips were screened according to the SCAN-CM 40:01 (7 and 13 mm) and stored at −20 °C. NaOH pellets (99.2%), H2O2 (30%), and Na2CO3 (99.8%) were purchased from VWR. Ionic liquid (1,5-diazabicyclo[4.3.0]non-5-enium acetate) was synthesized by the combination of acetic acid (glacial, 100% for analysis; Merck, Germany) and 1,5-diazabicyclo[4.3.0]non-5-ene (DBN; Fluorochem Ltd.)in a reactor at 70 °C [28 ,29 ].
Afilan CVS and Leomin PN for spin finish were purchased from Archroma. Priamine™ 1074 for polyhydroxyurethane production was purchased from Croda GmbH. Pure sodium silicate for fabric bleaching was purchased from Merck.
Lignin NMR: Deuterated chloroform (CDCl3), pyridine, deuterated dimethyl sulfoxide (DMSO‑d6), endo-n-hydroxy-5-norbornene-2,3-dicarboximide (e-HNDI), chromium (III) acetylacetonate (Cr(acac)3), 2-chloro-4,4,5,5-tetramethyl-1,3,2-dioxaphospholane (TMDP) and trioxane were purchased from Sigma-Aldrich.
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9

Comprehensive Analysis of Bioactive Compounds

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HPLC grade acetonitrile (ACN), methanol, fluorescein sodium salt, Folin-Ciocalteu reagent, n-hexane, ethane, acetone and toluene were purchased from Merck (Darmstadt, Germany). Na2SO4, KOH and sodium phosphate were purchased from Winkler (Winkler®, Santiago, Chile). Na2CO3 was acquired from VWR (Solon, Ohio, USA), while AAPH was obtained from Cayman (Cayman Chemical, Ann Arbor, MI, USA). Trolox, gallic acid and standards minerals and vitamins were purchased from Sigma Aldrich Co. (St. Louis, MO, USA). All chemicals used in the analysis were of analytical grade.
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10

Spectrophotometric Assay for α-Glucosidase Inhibition

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The spectrophotometric assay was conducted as previously described (Awosika and Aluko, 2019 (link)) with some modifications. Root extracts were diluted with ultrapure water (Purelab Flex, ELGA Veolia, United Kingdom) to give concentrations of 10 µg/ml to 1,000 μg/ml. Of these dilutions, 15 µl were mixed in 96-well microtest plates (VWR, Darmstadt, Germany) with 105 µl of 0.1 M phosphate buffer, pH 6.8 and 15 µl of α-glucosidase (0.5 U/ml) from Saccharomyces cerevisiae (Sigma-Aldrich, Taufkirchen, Germany). Following 5 min pre-incubation at 37°C, 15 µl 10 mM p-nitrophenyl-α-D-glucopyranoside (Sigma-Aldrich, Taufkirchen, Germany) in the same buffer were added as a substrate to initiate the reaction. The mixture was incubated for 20 min at 37°C, before 50 µl 2 M Na2CO3 (VWR, Darmstadt, Germany) were added to stop the reaction. A microplate reader (iEMS Reader MF, MTX Lab Systems, Helsinki, Finland) was used to measure the absorbance at 405 nm. Acarbose (Sigma-Aldrich, Taufkirchen, Germany) served as a reference inhibitor. The percentage inhibition of α-glucosidase was calculated by using the following equation: Inhibition(%)= [(AbCAbCblank)(AbSAbSblank)](AbCAbCblank)×100 AbC, absorbance of the control; AbS, absorbance of the sample. IC50 values were calculated by nonlinear regression using GraphPad Prism version 8.1.1.
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