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3 protocols using cul4a

1

Comprehensive Antibody Resource for Cell Biology

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Anti-PAR6β (BC31AP), anti-Lgl2 (N13AP), and anti-Lgl2-S653P antibodies have been described previously (Yamanaka et al., 2003 (link)). Anti-GP135 (3F2/D8) was a kind gift from George K. Ojakian (State University of New York, Brooklyn, NY). Other antibodies were purchased as follows: Lgl2 (Abnova, Taipei, Taiwan), Lgl1 (Sigma-Aldrich, St. Louis, MO), VprBP (Proteintech Group, Chicago, IL), DDB1 (Bethyl, Montgomery, TX), Cul4A (Bethyl), Cul4B (Proteintech Group), Cdt2 (Novus Biologicals, Littleton, CO), PKC iota (BD, Franklin Lakes, NJ), zonula occludens-1 (ZO-1; Santa Cruz Biotechnology, Dallas, TX), p27kip1 (BD), p16INK4a (Cell Signaling, Danvers, MA), p21Waf1/Cip1 (Santa Cruz Biotechnology), Skp2 (Santa Cruz Biotechnology), Cdh1 (Abcam, Cambridge, United Kingdom), cyclin A (Santa Cruz Biotechnology), cyclin B1 (Santa Cruz Biotechnology), HSP70 (Enzo Life Sciences, Farmingdale NY), EDD1 (Bethyl), glyceraldehyde-3-phosphate dehydrogenase (Abcam), β-Actin (Sigma-Aldrich), E-cadherin (Sigma-Aldrich), V5 (Invitrogen), HA (Roche, Basel, Switzerland), SBP (Santa Cruz Biotechnology), Myc (Millipore, Billerica, MA; Cell Signaling), BrdU (BD; Abcam), and normal rabbit immunoglobulin G (Cell Signaling).
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2

Immunoblotting of DNA Damage Signaling

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Cell pellets were harvested and then lysed in a buffer consisting of: 10mM HEPES pH 7.5, 10mM KCl, 1% NP-40, with phosphatase inhibitor (PhosSTOP from Sigma Aldrich) and a protease inhibitor cocktail (Roche cOmplete EDTA-free). Lysates were cleared of chromatin and membranous debris by centrifugation (10–15 minutes at 21,100 x g) and lysate concentrations were determined by Bradford (Biorad) or BCA assay (Pierce).
A total of 30–60 μgs of protein was loaded per lane. Proteins were separated on a 4–12% Bis-Tris gradient gel (Biorad) and blotted onto PVDF (Millipore) or nitrocellulose (GE).
Antibodies utilized are as follows: HUWE1/Lasu1/Ureb1 (Bethyl), Chk1 (SCBT), pATM S1981 (CST), ATM (CST), pATR T1989 (CST), ATR (CST), pChk1 S296 (CST), Actin-HRP (Abcam), GFP (GeneTex), MDM2 (R&D Systems), Cul4A (Bethyl), HA (SCBT), p53 (SCBT), γ-H2AX (CST) and H2AX (CST). Blots were incubated overnight in primary antibody at 4°C with the exception of HRP-conjugated Actin, which was incubated for 1 hour at room temperature.
Immunoblots were quantified using ImageJ and values were plotted in Excel.
The Chk1-eGFP expression construct was generously provided by Dr. Youwei Zhang (Case Western Reserve University, Cleveland, Ohio). The HA-Ub expression construct was described previously [49 (link)].
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3

Melanoma Protein Signaling Profiling

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The melanoma tumor tissues and cultured cells were harvested in Tween 20 buffer containing 50mM HEPES (pH 8.0), 150mM NaCl, 2.5mM EGTA, 1mM EDTA, 0.1% Tween 20, and protease/phosphatase inhibitors (1mM phenylmethylsulphonyl fluoride, 20 U of aprotinin/ml, 5mg of leupeptin/ml, 1mM DTT, 0.4mM NaF, and 10mM β-glycerophosphate). Lysates were sonicated prior to clearing by centrifugation at 4°C for 30 min. Proteins were resolved by SDS-PAGE, transferred to membrane, and subjected to immunoblot. Antibodies utilized include PERK (Rockland), p-eIF2α S51 (Cell Signaling), BiP (Cell Signaling), total eIF2α (Cell Signaling), Cyclin D1 (mouse monoclonal D1-72-13G), Cul4a (Bethyl, A300-739A), p-AktS473 (Cell Signaling), total Akt (Cell Signaling), GAPDH (Cell Signaling) and β-actin (Sigma Aldrich).
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