The largest database of trusted experimental protocols

Axio imager m2 compound microscope

Manufactured by Zeiss

The Zeiss Axio Imager M2 is a compound microscope designed for high-resolution imaging and analysis. It features a modular design, allowing for customization to meet specific research needs. The microscope is equipped with advanced optics and illumination systems to provide clear, detailed images across a range of sample types.

Automatically generated - may contain errors

6 protocols using axio imager m2 compound microscope

1

Scoring Neuronal Defects in Live Animals

Check if the same lab product or an alternative is used in the 5 most similar protocols
A Zeiss Axio Imager M2 compound microscope was used for visual scoring of defects in neuronal morphology of live animals. Animals were anesthetized using 5 mM levamisole in M9 buffer. Markers used are: Pmec-4-GFP(zdIs5), Pmec-7-GFP(muIs32), and Punc-25-GFP(juIs76). TRN morphology was scored using zdIs5 unless otherwise noted. In scoring ALM ectopic neurite outgrowth, any projections from the ALM soma other than the anterior axon were measured and scored as “ectopic posterior neurite” if longer than 10 μm. ‘Multiple ectopic neurites’ was defined as >1 ectopic neurite extending from the ALM soma. PLM overshooting was defined as the axon of PLM extending anterior to the ALM soma13 (link). ALM soma shape was scored as normal (0), mildly defective (1) or severely defective (2) as detailed in Figure 2 legend.
+ Open protocol
+ Expand
2

Microscopy Imaging and Statistical Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
H&E and AB-PAS samples were imaged using a Zeiss AXIO Imager M2 compound microscope. An LSM900 Confocal Zeiss microscope was used to image immunofluorescent-stained samples, which were then analyzed using Fiji software [29 (link)]. The data were put through a Shapiro–Wilk normality test and a Levene test for equality of variances. Based on the normality and variance homogeneity of the datasets, Student’s t-test, Welch’s t-test, or Mann–Whitney U-test were applied to determine statistical significance. Student’s t-test was used for ordinal datasets.
+ Open protocol
+ Expand
3

Fluorescent Immunohistochemistry and in situ Hybridization Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cryo-sectioning of 14µm slices followed by fluorescent immunohistochemistry was performed on a Leica Cryostat CM1850. As primary antibodies rabbit anti-Acetylated Tubulin (Cell Signaling Technologies, 5335T) and mouse anti-Elavl3/Huc (Thermo Fisher Scientific, A-21271) were used in dilutions of 1:500 in blocking medium. As secondary antibodies goat-anti-mouse AlexaFluor-488 (ThermoFisher Scientific, A-11001) and goat-anti-rabbit AlexaFluor-555 (ThermoFisher Scientific, A-21428) were used in dilutions of 1:1000. After mounting with Dapi inoculated Moviol, samples were imaged on a Zeiss LSM710 confocal microscope.
Whole-mount in situ hybridizations were performed as previously described.28 (link) Stained specimens were cleared in 80% glycerol/PBS for several hours followed by mounting in 100% glycerol for image capturing on a Zeiss AxioImagerM.2 compound microscope using a 10x objective. Riboprobes of isl1 and atho7 cDNA were generated and used as described.29 (link),30 (link) Calculation of statistical significance among compared groups of certain experimental conditions was done via a χ2-test utilizing the programming language R. To allow for χ2-testing in this context algorithmic operations were performed with the three sub-groups (I) strong, (II) medium, (III) weak+none (sub-groups weak and none of the chart in Fig 5 LL’’’ were merged into a single phenotypic class).
+ Open protocol
+ Expand
4

Zebrafish Angiogenesis Imaging Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tg(fli1:EGFP)y1 zebrafish were used in this study [34 (link)]. To block pigmentation, embryos were raised from 22 hpf in the presence of 0.003% N-Phenylthiourea (PTU; Sigma-Aldrich #P7629). 29 hpf embryos were placed in each well of a 24-well plate in 1 mL egg water containing 0.1% DMSO (control) or 500 µM TNP-470. Embryos were kept at 28.5 °C until imaging took place. For imaging, live embryos were anaesthetized using Tricaine mesylate and were mounted in 0.5% low-melting-point agarose (SeaPlaque, Lonza). Images were acquired using a Zeiss LSM700 confocal microscope and an Axio Imager M2 compound microscope equipped with a 40 × 1.0 NA water objective. Images were exported as TIFF files using ZEN 2009 LE software (Zeiss), and figures were assembled using the Adobe Photoshop CS4 software, n = 17.
+ Open protocol
+ Expand
5

Histopathological Analysis of Excision Wound

Check if the same lab product or an alternative is used in the 5 most similar protocols
On the 15th post-wounding day, the animal skin tissue specimens of corresponding groups in the excision wound model were collected to perform histopathological studies. Skin specimens were processed and fixed in Bouin’s solution, followed by paraffin blocking. Skin sections of 5 µm thickness were taken in a microtome (Leica, RM 2145), followed by staining with hematoxylin and eosin (H&E), Masson’s trichome, and Toluidine blue stains as per standard procedures (Suntar et al., 2010 (link)). The microphotographs of sections were captured through an inbuilt analog camera (ProgRess® C5-JENOPTIK) attached to Carl Zeiss Axio Imager M2 compound microscope and the images were analyzed at (×100 and ×400 magnifications. Quantification of different cells (neutrophils, inflammatory cells, blood vessels, myofibroblasts, mast cells, and macrophages) per unit area of images at ×100 magnification were performed using NIH ImageJ software (Hashemnia et al., 2019 (link)).
+ Open protocol
+ Expand
6

Analyzing Intestinal GFP and LGG-1 Puncta

Check if the same lab product or an alternative is used in the 5 most similar protocols
Young adult animals were transferred to NGM plates containing 50 or 300 mM NaCl and 0 or 400 µM FUdR for 48 hours. After treatment, animals were mounted on an agarose pad and paralyzed for 5 minutes with 0.03% sodium azide. Images of GFP fluorescence were obtained on a Zeiss AxioImager M2 compound microscope, using 3ms exposures and identical settings for all images in a set. Fluorescent intensity was quantified in a uniform area of the anterior and posterior intestine for each image, using Axiovision 4.8 software. Differences in mean fluorescence intensity were compared with Student’s t-test. LGG-1::GFP puncta were counted in seam cells of 2-day old adults. Differences in numbers of puncta per cell were compared with the Wilcoxon rank-sum test.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!